Andrew Yates

@avapirev so you had not joy if you edit the makefiles directly? I agree the c++ style comments isn't great but that's not really a fault of cactus but HDF5....

That would be pretty awesome. Any ideas on timelines and what form this repackaging will take? On 26 October 2016 at 16:45, Glenn Hickey [email protected] wrote: > Yeah, I'd imagine...

I agree `residueAlphabet` is not an intrinsic part of the sequence and the advantages laid out here are important. I'm not sure if I think the designation of sequence type...

> FYI @uniqueg - I believe **[this](https://docs.google.com/document/d/1Zu_ksx6lG3OXcTTViIWyrSMqGTkcpDk9Oa7g1c7StvM/edit?usp=sharing)** is the latest version of the pagination guide from @andrewyatz and @mamanambiya. Yes this is the right one

Hi all. Just dropping a line as we in Ensembl have had this issue re-raised. I am sorry we haven't been able to fix this and from the thread above...

Pagination guide would suggest not using tokens for exactly these reasons and instead paging using counts/offsets. Tokens have been written up to prefer streaming & not that you cannot replay...

Thanks for the insights here. It might be better to move some of these to the TASC repo but from the first points here **Data tolerance** This is a key...

This is great thank you. I've added these suggestions. Please see what you think especially as your comments are with respect to promoting consistency. Really appreciate this

I've seen this problem before when you've got the following situation: ``` perl ### in A.pm package A; use 'B'; sub mysubina { } 1; ### B.pm package B; use...

Totally agree that the intention was to codify existing practice and not allowing `.` within names is an oversight. I would suggest the rules enforced in SAM likely will drive...