Lilin Yin

I suggest to convert VCF file into CSV file by Office, then read it into R by the function 'read.csv()'.

Microsoft Office Excel, a very common and basic tool on Windows system.

Thanks for your feedback. The result looks quite strange, which I haven't seen before, what I guess for reason of this situation may be the big number of ```NAs``` at...

Great thanks for your patience and carefulness of pointing out this issues, very helpful. From your test, my first instinct is that ```CMplot``` always starts the plot at 0 for...

Sorry for the late update. I have fixed the bug you proposed here, the latest version is available on GitHub, try to use it by ```source```, and I will submit...

hi, Thank you very much for using CMplot! The paper of CMplot is under review, but it doesn’t matter, it would be more appreciated if you could introduce CMplot to...

Hi Fuyou, Thank you for using CMplot. This warning doesn't affect the plotting, did you check the plotted results? are they fine? Best, Lilin

Hi Fuyou, I have tweaked the script. You may try to assign a character vector with unique chromosome labels (for example: ```mychr=unique(yourdata[,2])```) to the parameter 'chr.labels', and remain the chromosome...

Thank you for using CMplot. may i know whether you plan to plot those two differential methylations in one axis or separated axis?

you can try "CMplot(,..., multracks=TRUE)", but at this case, please remember to adjust 'pvalue' to 'meth.diff' scale by "-log10()" function prior to plotting.