Update according to genome update in 2021

Description of the issue:

It seems that in 2021, S. cerevisiae reference genome in SGD has been updated. The last one was in 2015. I am not sure what kind of changes in this update and wether the added/merged/removed metabolic genes, but it worth a check.

Expected feature/value/output:

Current feature/value/output:

Reproducing these results:

I hereby confirm that I have:

• [ ] Tested my code with all requirements for running the model
• [ ] Done this analysis in the develop branch of the repository
• [ ] Checked that a similar issue does not exist already
• [ ] If needed, asked first in the Gitter chat room about the issue

To check R64.3 (2021); R64.4 (2023) and R64.5 (2024).