cartopy
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SciTools
Contribution instructions not working on Windows
Description
This refers to https://github.com/SciTools/cartopy/blob/master/docs/source/contribute.rst.
Running pip install -e . after setting up the conda env fails during building of the Cython module with:
"geos_c.h": No such file or directory
@greglucas
Full environment definition
Operating system
Windows 10
Cartopy version
master (e55b9a21f4d58ef8db42299dfddedf8775f4fd13)
conda list
# Name Version Build Channel
alabaster 0.7.12 py_0 conda-forge
atomicwrites 1.4.0 pyh9f0ad1d_0 conda-forge
attrs 21.2.0 pyhd8ed1ab_0 conda-forge
babel 2.9.1 pyh44b312d_0 conda-forge
beautifulsoup4 4.10.0 pyha770c72_0 conda-forge
blosc 1.21.0 h0e60522_0 conda-forge
boost-cpp 1.74.0 h5b4e17d_5 conda-forge
brotli 1.0.9 h8ffe710_6 conda-forge
brotli-bin 1.0.9 h8ffe710_6 conda-forge
brotlipy 0.7.0 py39hb82d6ee_1003 conda-forge
bzip2 1.0.8 h8ffe710_4 conda-forge
ca-certificates 2021.10.8 h5b45459_0 conda-forge
cairo 1.16.0 h15b3021_1009 conda-forge
certifi 2021.10.8 py39hcbf5309_1 conda-forge
cffi 1.15.0 py39h0878f49_0 conda-forge
cfitsio 4.0.0 hd67004f_0 conda-forge
chardet 4.0.0 py39hcbf5309_2 conda-forge
charset-normalizer 2.0.0 pyhd8ed1ab_0 conda-forge
colorama 0.4.4 pyh9f0ad1d_0 conda-forge
cryptography 35.0.0 py39h7bc7c5c_2 conda-forge
curl 7.80.0 h789b8ee_0 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
cython 0.29.24 py39h415ef7b_1 conda-forge
docutils 0.17.1 py39hcbf5309_1 conda-forge
execnet 1.9.0 pyhd8ed1ab_0 conda-forge
expat 2.4.1 h39d44d4_0 conda-forge
flake8 4.0.1 pyhd8ed1ab_1 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.13.1 h1989441_1005 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.28.1 py39hb82d6ee_0 conda-forge
freetype 2.10.4 h546665d_1 conda-forge
freexl 1.0.6 ha8e266a_0 conda-forge
gdal 3.4.0 py39h3f5efd6_6 conda-forge
geos 3.10.1 h39d44d4_1 conda-forge
geotiff 1.7.0 hc8731e1_5 conda-forge
gettext 0.19.8.1 ha2e2712_1008 conda-forge
hdf4 4.2.15 h0e5069d_3 conda-forge
hdf5 1.12.1 nompi_h2a0e4a3_101 conda-forge
icu 69.1 h0e60522_0 conda-forge
idna 3.1 pyhd3deb0d_0 conda-forge
imagesize 1.3.0 pyhd8ed1ab_0 conda-forge
importlib-metadata 4.2.0 py39hcbf5309_0 conda-forge
iniconfig 1.1.1 pyh9f0ad1d_0 conda-forge
intel-openmp 2021.4.0 h57928b3_3556 conda-forge
jbig 2.1 h8d14728_2003 conda-forge
jinja2 3.0.3 pyhd8ed1ab_0 conda-forge
jpeg 9d h8ffe710_0 conda-forge
kealib 1.4.14 h8995ca9_3 conda-forge
kiwisolver 1.3.2 py39h2e07f2f_1 conda-forge
krb5 1.19.2 h20d022d_3 conda-forge
lcms2 2.12 h2a16943_0 conda-forge
lerc 3.0 h0e60522_0 conda-forge
libblas 3.9.0 12_win64_mkl conda-forge
libbrotlicommon 1.0.9 h8ffe710_6 conda-forge
libbrotlidec 1.0.9 h8ffe710_6 conda-forge
libbrotlienc 1.0.9 h8ffe710_6 conda-forge
libcblas 3.9.0 12_win64_mkl conda-forge
libcurl 7.80.0 h789b8ee_0 conda-forge
libdeflate 1.8 h8ffe710_0 conda-forge
libffi 3.4.2 h8ffe710_5 conda-forge
libgdal 3.4.0 h06381fc_6 conda-forge
libglib 2.70.1 h3be07f2_0 conda-forge
libiconv 1.16 he774522_0 conda-forge
libkml 1.3.0 h9859afa_1014 conda-forge
liblapack 3.9.0 12_win64_mkl conda-forge
libnetcdf 4.8.1 nompi_h1cc8e9d_101 conda-forge
libpng 1.6.37 h1d00b33_2 conda-forge
libpq 13.3 hfcc5ef8_3 conda-forge
librttopo 1.1.0 he35e8ac_8 conda-forge
libspatialite 5.0.1 hf126459_12 conda-forge
libssh2 1.10.0 h680486a_2 conda-forge
libtiff 4.3.0 hd413186_2 conda-forge
libwebp-base 1.2.1 h8ffe710_0 conda-forge
libxml2 2.9.12 hf5bbc77_1 conda-forge
libzip 1.8.0 hfed4ece_1 conda-forge
libzlib 1.2.11 h8ffe710_1013 conda-forge
lz4-c 1.9.3 h8ffe710_1 conda-forge
m2w64-gcc-libgfortran 5.3.0 6 conda-forge
m2w64-gcc-libs 5.3.0 7 conda-forge
m2w64-gcc-libs-core 5.3.0 7 conda-forge
m2w64-gmp 6.1.0 2 conda-forge
m2w64-libwinpthread-git 5.0.0.4634.697f757 2 conda-forge
markupsafe 2.0.1 py39hb82d6ee_1 conda-forge
matplotlib-base 3.5.0 py39h27bb5c7_200 conda-forge/label/testing
mccabe 0.6.1 py_1 conda-forge
mkl 2021.4.0 h0e2418a_729 conda-forge
more-itertools 8.11.0 pyhd8ed1ab_0 conda-forge
msys2-conda-epoch 20160418 1 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
numpy 1.21.4 py39h6635163_0 conda-forge
olefile 0.46 pyh9f0ad1d_1 conda-forge
openjpeg 2.4.0 hb211442_1 conda-forge
openssl 1.1.1l h8ffe710_0 conda-forge
owslib 0.25.0 pyhd8ed1ab_0 conda-forge
packaging 21.3 pyhd8ed1ab_0 conda-forge
pcre 8.45 h0e60522_0 conda-forge
pillow 8.4.0 py39h916092e_0 conda-forge
pip 21.3.1 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h8ffe710_0 conda-forge
pluggy 1.0.0 py39hcbf5309_2 conda-forge
poppler 21.11.0 h24fffdf_0 conda-forge
poppler-data 0.4.11 hd8ed1ab_0 conda-forge
postgresql 13.3 h1c22c4f_3 conda-forge
proj 8.2.0 h1cfcee9_0 conda-forge
py 1.11.0 pyh6c4a22f_0 conda-forge
pycodestyle 2.8.0 pyhd8ed1ab_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pydata-sphinx-theme 0.7.2 pyhd8ed1ab_0 conda-forge
pyflakes 2.4.0 pyhd8ed1ab_0 conda-forge
pygments 2.10.0 pyhd8ed1ab_0 conda-forge
pykdtree 1.3.4 py39h5d4886f_1 conda-forge
pyopenssl 21.0.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.6 pyhd8ed1ab_0 conda-forge
pyproj 3.3.0 py39h312c5a8_0 conda-forge
pyshp 2.1.3 pyh44b312d_0 conda-forge
pysocks 1.7.1 py39hcbf5309_4 conda-forge
pytest 6.2.5 py39hcbf5309_1 conda-forge
pytest-forked 1.3.0 pyhd3deb0d_0 conda-forge
pytest-mpl 0.13 pyhd8ed1ab_0 conda-forge
pytest-xdist 2.4.0 pyhd8ed1ab_0 conda-forge
python 3.9.7 h7840368_3_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python_abi 3.9 2_cp39 conda-forge
pytz 2021.3 pyhd8ed1ab_0 conda-forge
pyyaml 6.0 py39hb82d6ee_3 conda-forge
requests 2.26.0 pyhd8ed1ab_0 conda-forge
scipy 1.7.2 py39hc0c34ad_0 conda-forge
setuptools 59.2.0 py39hcbf5309_0 conda-forge
setuptools-scm 6.3.2 pyhd8ed1ab_0 conda-forge
setuptools_scm 6.3.2 hd8ed1ab_0 conda-forge
setuptools_scm_git_archive 1.1 py_0 conda-forge
shapely 1.8.0 py39h1db6edd_4 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge
soupsieve 2.3 pyhd8ed1ab_0 conda-forge
sphinx 4.3.0 pyh6c4a22f_0 conda-forge
sphinx-gallery 0.10.1 pyhd8ed1ab_0 conda-forge
sphinxcontrib-applehelp 1.0.2 py_0 conda-forge
sphinxcontrib-devhelp 1.0.2 py_0 conda-forge
sphinxcontrib-htmlhelp 2.0.0 pyhd8ed1ab_0 conda-forge
sphinxcontrib-jsmath 1.0.1 py_0 conda-forge
sphinxcontrib-qthelp 1.0.3 py_0 conda-forge
sphinxcontrib-serializinghtml 1.1.5 pyhd8ed1ab_1 conda-forge
sqlite 3.36.0 h8ffe710_2 conda-forge
tbb 2021.4.0 h2d74725_1 conda-forge
tiledb 2.3.4 h78dabda_0 conda-forge
tk 8.6.11 h8ffe710_1 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 1.2.2 pyhd8ed1ab_0 conda-forge
tzdata 2021e he74cb21_0 conda-forge
ucrt 10.0.20348.0 h57928b3_0 conda-forge
urllib3 1.26.7 pyhd8ed1ab_0 conda-forge
vc 14.2 hb210afc_5 conda-forge
vs2015_runtime 14.29.30037 h902a5da_5 conda-forge
wheel 0.37.0 pyhd8ed1ab_1 conda-forge
win_inet_pton 1.1.0 py39hcbf5309_3 conda-forge
xerces-c 3.2.3 h0e60522_4 conda-forge
xz 5.2.5 h62dcd97_1 conda-forge
yaml 0.2.5 he774522_0 conda-forge
zipp 3.6.0 pyhd8ed1ab_0 conda-forge
zlib 1.2.11 h8ffe710_1013 conda-forge
zstd 1.5.0 h6255e5f_0 conda-forge
pip list
Package Version
----------------------------- ---------
alabaster 0.7.12
atomicwrites 1.4.0
attrs 21.2.0
Babel 2.9.1
beautifulsoup4 4.10.0
brotlipy 0.7.0
certifi 2021.10.8
cffi 1.15.0
chardet 4.0.0
charset-normalizer 2.0.0
colorama 0.4.4
cryptography 35.0.0
cycler 0.11.0
Cython 0.29.24
docutils 0.17.1
execnet 1.9.0
flake8 4.0.1
fonttools 4.28.1
GDAL 3.4.0
idna 3.1
imagesize 1.3.0
importlib-metadata 4.2.0
iniconfig 1.1.1
Jinja2 3.0.3
kiwisolver 1.3.2
MarkupSafe 2.0.1
matplotlib 3.5.0
mccabe 0.6.1
more-itertools 8.11.0
munkres 1.1.4
numpy 1.21.4
olefile 0.46
OWSLib 0.25.0
packaging 21.3
Pillow 8.4.0
pip 21.3.1
pluggy 1.0.0
py 1.11.0
pycodestyle 2.8.0
pycparser 2.21
pydata-sphinx-theme 0.7.2
pyflakes 2.4.0
Pygments 2.10.0
pykdtree 1.3.4
pyOpenSSL 21.0.0
pyparsing 3.0.6
pyproj 3.3.0
pyshp 2.1.3
PySocks 1.7.1
pytest 6.2.5
pytest-forked 1.3.0
pytest-mpl 0.13
pytest-xdist 2.4.0
python-dateutil 2.8.2
pytz 2021.3
PyYAML 6.0
requests 2.26.0
scipy 1.7.2
setuptools 59.2.0
setuptools-scm 6.3.2
setuptools-scm-git-archive 1.1
Shapely 1.8.0
six 1.16.0
snowballstemmer 2.2.0
soupsieve 2.3
Sphinx 4.3.0
sphinx-gallery 0.10.1
sphinxcontrib-applehelp 1.0.2
sphinxcontrib-devhelp 1.0.2
sphinxcontrib-htmlhelp 2.0.0
sphinxcontrib-jsmath 1.0.1
sphinxcontrib-qthelp 1.0.3
sphinxcontrib-serializinghtml 1.1.5
toml 0.10.2
tomli 1.2.2
urllib3 1.26.7
wheel 0.37.0
win-inet-pton 1.1.0
zipp 3.6.0
It looks like you have geos installed... Just to be sure, you did activate the environment when pip installing?
This is the conda installation procedure, so perhaps check that your library paths are correct? https://github.com/conda-forge/cartopy-feedstock/blob/master/recipe/bld.bat
It looks like there used to be a copy of "geos_c.h" over to "geos.h" on Windows, but I don't see that happening anymore. https://stackoverflow.com/questions/45276861/pip-install-global-option-l-library-path-option-l-not-recongnised
Unfortunately, I don't have a Windows machine to test it out on, so all I can suggest is looking at the potential library paths and trying to find out what your geos header file is called and where it is located. if you figure out that we need to update the installation procedures for windows, a PR with that fix would be very welcome!
It looks like you have geos installed... Just to be sure, you did activate the environment when pip installing?
Yes, it was activated.
I just saw that before the error there's a warning:
...\cartopy\setup.py:117: UserWarning: Unable to determine GEOS version. Ensure you have 3.7.2 or later installed, or installation may fail.
You have geos 3.10.1 installed according to your environment though!
geos 3.10.1 h39d44d4_1 conda-forge
So, somehow the system isn't finding that library that you already have.
Look for these paths and what they are set to when you have activated your environment. The location of the geos libraries needs to be added to these paths if it isn't already there.
set LIB=%LIBRARY_LIB%;%LIB%
set LIBPATH=%LIBRARY_LIB%;%LIBPATH%
set INCLUDE=%LIBRARY_INC%;%INCLUDE%
set FORCE_CYTHON=1
We have just released v0.22 which should help with the compatibility between packages and installation much easier. Please open a new issue if you are still having problems.