DifferentialEquations.jl
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MethodError while solving PDE
Describe the bug š
When solving the Fitzhugh Nagumo equation on https://docs.sciml.ai/ModelOrderReduction/dev/tutorials/deim_FitzHugh-Nagumo/ using the single argument solve call, I get a MethodError. I don't get the error when I specify the solver.
Expected behavior
Creation of a PDESolution object like the following:
julia> solve(prob, Tsit5())
PDESolution:
Return Code:
Success
Dependent variables:
w(x, t): (16, 232) sized solution
v(x, t): (16, 232) sized solution
Domain:
t ā (0.0, 14.0) with 232 non-uniform points. average step size 0.06060606060606061
x ā (0.0, 1.0) with 16 points, step size 0.06666666666666667
From system:
Equations:
L"\begin{align}
-0.05 + 0.015 \frac{\mathrm{d}}{\mathrm{d}t} v\left( x, t \right) - 0.000225 \frac{\mathrm{d}}{\mathrm{d}x} \frac{\mathrm{d}}{\mathrm{d}x} v\left( x, t \right) + w\left( x, t \right) - v\left( x, t \right) \left( 1 - v\left( x, t \right) \right) \left( -0.1 + v\left( x, t \right) \right) &= 0 \\
-0.05 - 0.5 v\left( x, t \right) + \frac{\mathrm{d}}{\mathrm{d}t} w\left( x, t \right) + 2 w\left( x, t \right) &= 0
\end{align}
"
Boundary/Initial Conditions:
L"\begin{align}
v\left( x, 0 \right) &= 0 \\
w\left( x, 0 \right) &= 0 \\
\frac{\mathrm{d}}{\mathrm{d}x} v\left( 0, t \right) &= - 50000 t^{3} e^{ - 15 t} \\
\frac{\mathrm{d}}{\mathrm{d}x} v\left( 1, t \right) &= 0
\end{align}
"
Minimal Reproducible Example š
using ModelingToolkit
@independent_variables x t
@variables v(..) w(..)
Dx = Differential(x)
Dxx = Dx^2
Dt = Differential(t)
const L = 1.0
const ε = 0.015
const b = 0.5
const γ = 2.0
const c = 0.05
f(v) = v * (v - 0.1) * (1.0 - v)
iā(t) = 50000.0t^3 * exp(-15.0t)
eqs = [ε * Dt(v(x, t)) ~ ε^2 * Dxx(v(x, t)) + f(v(x, t)) - w(x, t) + c,
Dt(w(x, t)) ~ b * v(x, t) - γ * w(x, t) + c]
bcs = [v(x, 0.0) ~ 0.0,
w(x, 0) ~ 0.0,
Dx(v(0, t)) ~ -iā(t),
Dx(v(L, t)) ~ 0.0]
domains = [x ā (0.0, L),
t ā (0.0, 14.0)]
ivs = [x, t]
dvs = [v(x, t), w(x, t)]
pde_sys = PDESystem(eqs, bcs, domains, ivs, dvs; name = Symbol("FitzHugh-Nagumo"))
using MethodOfLines
N = 15 # equidistant discretization intervals
dx = (L - 0.0) / N
dxs = [x => dx]
order = 2
discretization = MOLFiniteDifference(dxs, t; approx_order = order)
ode_sys, tspan = symbolic_discretize(pde_sys, discretization)
simp_sys = structural_simplify(ode_sys)
ode_prob = ODEProblem(simp_sys, nothing, tspan)
solve(ode_prob)
Error & Stacktrace ā ļø
julia> solve(prob)
ERROR: MethodError: no method matching SciMLBase.PDETimeSeriesSolution(::SciMLBase.PDETimeSeriesSolution{ā¦}, ::MethodOfLines.MOLMetadata{ā¦})
Closest candidates are:
SciMLBase.PDETimeSeriesSolution(::SciMLBase.AbstractODESolution{T}, ::MethodOfLines.MOLMetadata) where T
@ MethodOfLines ~/.julia/packages/MethodOfLines/iJ5Ue/src/interface/solution/timedep.jl:11
Stacktrace:
[1] wrap_sol(sol::SciMLBase.PDETimeSeriesSolution{ā¦}, metadata::MethodOfLines.MOLMetadata{ā¦})
@ SciMLBase ~/.julia/packages/SciMLBase/jU6iu/src/solutions/pde_solutions.jl:115
[2] wrap_sol(sol::SciMLBase.PDETimeSeriesSolution{ā¦})
@ SciMLBase ~/.julia/packages/SciMLBase/jU6iu/src/solutions/basic_solutions.jl:95
[3] solve(::ODEProblem{ā¦}; sensealg::Nothing, u0::Nothing, p::Nothing, wrap::Val{ā¦}, kwargs::@Kwargs{})
@ DiffEqBase ~/.julia/packages/DiffEqBase/slKc5/src/solve.jl:1003
[4] solve(::ODEProblem{Vector{ā¦}, Tuple{ā¦}, true, ModelingToolkit.MTKParameters{ā¦}, ODEFunction{ā¦}, @Kwargs{}, MethodOfLines.MOLMetadata{ā¦}})
@ DiffEqBase ~/.julia/packages/DiffEqBase/slKc5/src/solve.jl:993
[5] top-level scope
@ REPL[14]:1
Some type information was truncated. Use `show(err)` to see complete types.
Environment (please complete the following information):
- Output of
using Pkg; Pkg.status()
(ROM_FitzhughNagumo) pkg> st
Project ROM_FitzhughNagumo v0.1.0
Status `~/.julia/dev/ROM_FitzhughNagumo/Project.toml`
[0c46a032] DifferentialEquations v7.14.0
[94925ecb] MethodOfLines v0.11.3
ā [961ee093] ModelingToolkit v9.32.0
Info Packages marked with ā have new versions available and may be upgradable.
- Output of
using Pkg; Pkg.status(; mode = PKGMODE_MANIFEST)
julia> Pkg.status(; mode = PKGMODE_MANIFEST)
Project ROM_FitzhughNagumo v0.1.0
Status `~/.julia/dev/ROM_FitzhughNagumo/Manifest.toml`
[47edcb42] ADTypes v1.7.1
[1520ce14] AbstractTrees v0.4.5
[7d9f7c33] Accessors v0.1.37
[79e6a3ab] Adapt v4.0.4
[66dad0bd] AliasTables v1.1.3
[ec485272] ArnoldiMethod v0.4.0
[4fba245c] ArrayInterface v7.16.0
[4c555306] ArrayLayouts v1.10.3
[13072b0f] AxisAlgorithms v1.1.0
[aae01518] BandedMatrices v1.7.4
[e2ed5e7c] Bijections v0.1.9
[62783981] BitTwiddlingConvenienceFunctions v0.1.6
[764a87c0] BoundaryValueDiffEq v5.9.1
[fa961155] CEnum v0.5.0
[2a0fbf3d] CPUSummary v0.2.6
[00ebfdb7] CSTParser v3.4.3
[d360d2e6] ChainRulesCore v1.24.0
[fb6a15b2] CloseOpenIntervals v0.1.13
[861a8166] Combinatorics v1.0.2
[a80b9123] CommonMark v0.8.12
[38540f10] CommonSolve v0.2.4
[bbf7d656] CommonSubexpressions v0.3.1
[f70d9fcc] CommonWorldInvalidations v1.0.0
[34da2185] Compat v4.16.0
[b152e2b5] CompositeTypes v0.1.4
[a33af91c] CompositionsBase v0.1.2
[2569d6c7] ConcreteStructs v0.2.3
ā
[187b0558] ConstructionBase v1.5.6
[adafc99b] CpuId v0.3.1
[a8cc5b0e] Crayons v4.1.1
[9a962f9c] DataAPI v1.16.0
[864edb3b] DataStructures v0.18.20
[e2d170a0] DataValueInterfaces v1.0.0
[bcd4f6db] DelayDiffEq v5.48.1
[2b5f629d] DiffEqBase v6.155.0
[459566f4] DiffEqCallbacks v3.9.1
[77a26b50] DiffEqNoiseProcess v5.23.0
[163ba53b] DiffResults v1.1.0
[b552c78f] DiffRules v1.15.1
[0c46a032] DifferentialEquations v7.14.0
[a0c0ee7d] DifferentiationInterface v0.5.17
[b4f34e82] Distances v0.10.11
[31c24e10] Distributions v0.25.111
[ffbed154] DocStringExtensions v0.9.3
[5b8099bc] DomainSets v0.7.14
ā
[7c1d4256] DynamicPolynomials v0.5.7
ā
[06fc5a27] DynamicQuantities v0.13.2
[4e289a0a] EnumX v1.0.4
[f151be2c] EnzymeCore v0.7.8
[d4d017d3] ExponentialUtilities v1.26.1
[e2ba6199] ExprTools v0.1.10
ā
[6b7a57c9] Expronicon v0.8.5
[9d29842c] FastAlmostBandedMatrices v0.1.3
[7034ab61] FastBroadcast v0.3.5
[9aa1b823] FastClosures v0.3.2
[29a986be] FastLapackInterface v2.0.4
[1a297f60] FillArrays v1.13.0
[64ca27bc] FindFirstFunctions v1.4.1
[6a86dc24] FiniteDiff v2.24.0
[1fa38f19] Format v1.3.7
[f6369f11] ForwardDiff v0.10.36
[069b7b12] FunctionWrappers v1.1.3
[77dc65aa] FunctionWrappersWrappers v0.1.3
[d9f16b24] Functors v0.4.12
[46192b85] GPUArraysCore v0.1.6
[c145ed77] GenericSchur v0.5.4
[c27321d9] Glob v1.3.1
[86223c79] Graphs v1.11.2
[3e5b6fbb] HostCPUFeatures v0.1.17
[34004b35] HypergeometricFunctions v0.3.24
[615f187c] IfElse v0.1.1
[d25df0c9] Inflate v0.1.5
[a98d9a8b] Interpolations v0.15.1
[8197267c] IntervalSets v0.7.10
[3587e190] InverseFunctions v0.1.16
[92d709cd] IrrationalConstants v0.2.2
[82899510] IteratorInterfaceExtensions v1.0.0
[692b3bcd] JLLWrappers v1.6.0
[682c06a0] JSON v0.21.4
[98e50ef6] JuliaFormatter v1.0.60
[ccbc3e58] JumpProcesses v9.13.7
[ef3ab10e] KLU v0.6.0
[ba0b0d4f] Krylov v0.9.6
[b964fa9f] LaTeXStrings v1.3.1
[2ee39098] LabelledArrays v1.16.0
[984bce1d] LambertW v0.4.6
[23fbe1c1] Latexify v0.16.5
[10f19ff3] LayoutPointers v0.1.17
[5078a376] LazyArrays v2.2.1
[2d8b4e74] LevyArea v1.0.0
[d3d80556] LineSearches v7.3.0
[7ed4a6bd] LinearSolve v2.34.0
[2ab3a3ac] LogExpFunctions v0.3.28
[bdcacae8] LoopVectorization v0.12.171
[d8e11817] MLStyle v0.4.17
[1914dd2f] MacroTools v0.5.13
[d125e4d3] ManualMemory v0.1.8
[a3b82374] MatrixFactorizations v3.0.1
[bb5d69b7] MaybeInplace v0.1.4
[94925ecb] MethodOfLines v0.11.3
[e1d29d7a] Missings v1.2.0
ā [961ee093] ModelingToolkit v9.32.0
[46d2c3a1] MuladdMacro v0.2.4
[102ac46a] MultivariatePolynomials v0.5.6
[d8a4904e] MutableArithmetics v1.4.6
[d41bc354] NLSolversBase v7.8.3
[2774e3e8] NLsolve v4.5.1
[77ba4419] NaNMath v1.0.2
[8913a72c] NonlinearSolve v3.14.0
[6fe1bfb0] OffsetArrays v1.14.1
[429524aa] Optim v1.9.4
[bac558e1] OrderedCollections v1.6.3
[1dea7af3] OrdinaryDiffEq v6.89.0
[89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.1.0
[6ad6398a] OrdinaryDiffEqBDF v1.1.2
[bbf590c4] OrdinaryDiffEqCore v1.5.1
[50262376] OrdinaryDiffEqDefault v1.1.0
[4302a76b] OrdinaryDiffEqDifferentiation v1.1.0
[9286f039] OrdinaryDiffEqExplicitRK v1.1.0
[e0540318] OrdinaryDiffEqExponentialRK v1.1.0
[becaefa8] OrdinaryDiffEqExtrapolation v1.1.0
[5960d6e9] OrdinaryDiffEqFIRK v1.1.1
[101fe9f7] OrdinaryDiffEqFeagin v1.1.0
[d3585ca7] OrdinaryDiffEqFunctionMap v1.1.1
[d28bc4f8] OrdinaryDiffEqHighOrderRK v1.1.0
[9f002381] OrdinaryDiffEqIMEXMultistep v1.1.0
[521117fe] OrdinaryDiffEqLinear v1.1.0
[1344f307] OrdinaryDiffEqLowOrderRK v1.2.0
[b0944070] OrdinaryDiffEqLowStorageRK v1.2.1
[127b3ac7] OrdinaryDiffEqNonlinearSolve v1.2.1
[c9986a66] OrdinaryDiffEqNordsieck v1.1.0
[5dd0a6cf] OrdinaryDiffEqPDIRK v1.1.0
[5b33eab2] OrdinaryDiffEqPRK v1.1.0
[04162be5] OrdinaryDiffEqQPRK v1.1.0
[af6ede74] OrdinaryDiffEqRKN v1.1.0
[43230ef6] OrdinaryDiffEqRosenbrock v1.2.0
[2d112036] OrdinaryDiffEqSDIRK v1.1.0
[669c94d9] OrdinaryDiffEqSSPRK v1.2.0
[e3e12d00] OrdinaryDiffEqStabilizedIRK v1.1.0
[358294b1] OrdinaryDiffEqStabilizedRK v1.1.0
[fa646aed] OrdinaryDiffEqSymplecticRK v1.1.0
[b1df2697] OrdinaryDiffEqTsit5 v1.1.0
[79d7bb75] OrdinaryDiffEqVerner v1.1.1
[a7812802] PDEBase v0.1.14
[90014a1f] PDMats v0.11.31
[65ce6f38] PackageExtensionCompat v1.0.2
[d96e819e] Parameters v0.12.3
[69de0a69] Parsers v2.8.1
[e409e4f3] PoissonRandom v0.4.4
[f517fe37] Polyester v0.7.16
[1d0040c9] PolyesterWeave v0.2.2
[85a6dd25] PositiveFactorizations v0.2.4
[d236fae5] PreallocationTools v0.4.24
[aea7be01] PrecompileTools v1.2.1
[21216c6a] Preferences v1.4.3
[43287f4e] PtrArrays v1.2.1
[1fd47b50] QuadGK v2.11.0
[74087812] Random123 v1.7.0
[e6cf234a] RandomNumbers v1.6.0
[c84ed2f1] Ratios v0.4.5
[3cdcf5f2] RecipesBase v1.3.4
[731186ca] RecursiveArrayTools v3.27.0
[f2c3362d] RecursiveFactorization v0.2.23
[189a3867] Reexport v1.2.2
[ae029012] Requires v1.3.0
[ae5879a3] ResettableStacks v1.1.1
[79098fc4] Rmath v0.7.1
[7e49a35a] RuntimeGeneratedFunctions v0.5.13
[94e857df] SIMDTypes v0.1.0
[476501e8] SLEEFPirates v0.6.43
[0bca4576] SciMLBase v2.52.2
[c0aeaf25] SciMLOperators v0.3.10
[53ae85a6] SciMLStructures v1.5.0
[efcf1570] Setfield v1.1.1
[727e6d20] SimpleNonlinearSolve v1.12.0
[699a6c99] SimpleTraits v0.9.4
[ce78b400] SimpleUnPack v1.1.0
[a2af1166] SortingAlgorithms v1.2.1
[47a9eef4] SparseDiffTools v2.20.0
[0a514795] SparseMatrixColorings v0.4.0
[e56a9233] Sparspak v0.3.9
[276daf66] SpecialFunctions v2.4.0
[aedffcd0] Static v1.1.1
[0d7ed370] StaticArrayInterface v1.8.0
[90137ffa] StaticArrays v1.9.7
[1e83bf80] StaticArraysCore v1.4.3
[82ae8749] StatsAPI v1.7.0
[2913bbd2] StatsBase v0.34.3
[4c63d2b9] StatsFuns v1.3.1
[9672c7b4] SteadyStateDiffEq v2.4.0
[789caeaf] StochasticDiffEq v6.69.0
[7792a7ef] StrideArraysCore v0.5.7
[c3572dad] Sundials v4.25.0
[2efcf032] SymbolicIndexingInterface v0.3.30
ā [19f23fe9] SymbolicLimits v0.2.1
ā
[d1185830] SymbolicUtils v2.1.3
ā
[0c5d862f] Symbolics v5.36.0
[3783bdb8] TableTraits v1.0.1
[bd369af6] Tables v1.12.0
ā
[8ea1fca8] TermInterface v0.4.1
[8290d209] ThreadingUtilities v0.5.2
[a759f4b9] TimerOutputs v0.5.24
[0796e94c] Tokenize v0.5.29
[d5829a12] TriangularSolve v0.2.1
[410a4b4d] Tricks v0.1.9
[781d530d] TruncatedStacktraces v1.4.0
[5c2747f8] URIs v1.5.1
[3a884ed6] UnPack v1.0.2
[1986cc42] Unitful v1.21.0
[a7c27f48] Unityper v0.1.6
[3d5dd08c] VectorizationBase v0.21.70
[19fa3120] VertexSafeGraphs v0.2.0
[efce3f68] WoodburyMatrices v1.0.0
[1d5cc7b8] IntelOpenMP_jll v2024.2.1+0
[856f044c] MKL_jll v2024.2.0+0
[efe28fd5] OpenSpecFun_jll v0.5.5+0
ā
[f50d1b31] Rmath_jll v0.4.3+0
ā
[fb77eaff] Sundials_jll v5.2.2+0
[1317d2d5] oneTBB_jll v2021.12.0+0
[0dad84c5] ArgTools v1.1.1
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8ba89e20] Distributed
[f43a241f] Downloads v1.6.0
[7b1f6079] FileWatching
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[4af54fe1] LazyArtifacts
[b27032c2] LibCURL v0.6.4
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[ca575930] NetworkOptions v1.2.0
[44cfe95a] Pkg v1.10.0
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA v0.7.0
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays v1.10.0
[10745b16] Statistics v1.10.0
[4607b0f0] SuiteSparse
[fa267f1f] TOML v1.0.3
[a4e569a6] Tar v1.10.0
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
[e66e0078] CompilerSupportLibraries_jll v1.1.1+0
[deac9b47] LibCURL_jll v8.4.0+0
[e37daf67] LibGit2_jll v1.6.4+0
[29816b5a] LibSSH2_jll v1.11.0+1
[c8ffd9c3] MbedTLS_jll v2.28.2+1
[14a3606d] MozillaCACerts_jll v2023.1.10
[4536629a] OpenBLAS_jll v0.3.23+4
[05823500] OpenLibm_jll v0.8.1+2
[bea87d4a] SuiteSparse_jll v7.2.1+1
[83775a58] Zlib_jll v1.2.13+1
[8e850b90] libblastrampoline_jll v5.11.0+0
[8e850ede] nghttp2_jll v1.52.0+1
[3f19e933] p7zip_jll v17.4.0+2
Info Packages marked with ā and ā
have new versions available. Those with ā may be upgradable, but those with ā
are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
- Output of
versioninfo()
julia> versioninfo()
Julia Version 1.10.5
Commit 6f3fdf7b362 (2024-08-27 14:19 UTC)
Build Info:
Official https://julialang.org/ release
Platform Info:
OS: macOS (arm64-apple-darwin22.4.0)
CPU: 8 Ć Apple M2
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-15.0.7 (ORCJIT, apple-m1)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)
Environment:
JULIA_PKG_USE_CLI_GIT = true
JULIA_PKG_SERVER = internal.juliahub.com
Additional context
Add any other context about the problem here.