SORMAS-Project

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Feature Description

Update the sample type and pathogen test entities, DTOs, and UI forms to support Measles-specific requirements as described in the Measles adaptation documentation.

Added Value/Benefit

Pathogen tests and samples updated and in line with current requirements.

Acceptance Criteria

• [ ] The sample type list is restricted to:
  • Blood, Dry blood spot, Serum, Nasopharyngeal swab, Throat swab, Nasopharyngeal aspirate, Throat aspirate, Saliva/Oral fluid, Amniotic fluid, Urine, Other.
• [ ] "Dry blood spot" and "Amniotic fluid" are added as new sample types.
• [ ] The pathogen test list is restricted to:
  • PCR, Culture, IgM serum antibody, IgG serum antibody, Sequencing.
• [ ] "Genotyping" is added as a new pathogen test, with result as a serogroup from the specified list.
• [ ] The UI forms for samples and pathogen tests only display the allowed types/tests for Measles cases.

Implementation Details

• Update the sample type and pathogen test enums/entities to include the new values.
• Ensure that only the specified sample types and pathogen tests are selectable in the UI for Measles cases.
• For "Genotyping", provide a dropdown or input for serogroup result as required.
• Remove or hide any sample types or pathogen tests not listed above from the Measles workflow.

Mapping of Sample Types

Sample Type	Field in Sample.java / Enum	Notes
Blood	Present
Dry blood spot	To be added	New type
Serum	Present
Nasopharyngeal swab	Present
Throat swab	Present
Nasopharyngeal aspirate	Present
Throat aspirate	Present
Saliva/Oral fluid	Present
Amniotic fluid	To be added	New type
Urine	Present
Other	Present

Mapping of Pathogen Tests

Pathogen Test	Field in PathogenTest.java / Enum	Notes
PCR	Present
Culture	Present
IgM serum antibody	Present
IgG serum antibody	Present
Sequencing	Present
Genotyping	To be added	New test, result as serogroup

Mockups

No response

Additional Information

No response