matnwb

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tutorial for reading data with dynamically loaded filters

1

bendichter

Tutorial typo

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From the matlab tutorial for calcium imaging: https://neurodatawithoutborders.github.io/matnwb/tutorials/html/ophys.html read_nwbfile.processing.get('behavior').nwbdatainterface.get('Position').spatialseries.get('SpatialSeries') should be read_nwbfile.get('processing').etc

ehennestad

failing validation of matnwb-generated files with extension in cached namespace

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pynwb validation of matnwb-generated files fails when an extension is in the cached namespace. This is and independent issue from issue #349 and is not fixed by PR #350 To...

cechava

When you write an NWB file, it automatically writes all of the modality-specific groups in `/general`: `extracellular_ephys`, `intracellular_ephys`, `optogenetics`, and `optophysiology`. Currently, all of these groups are written, even though...

bendichter

issue exporting NWB file after it has already been created

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I would like to do the following: 1) read in an nwb file 2) do something with it like create a new segmentation plane attached to an imaging plane 3)...

cechava

tutorial for types.hdmf_common classes

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Need a tutorial that covers construction and usage for built-in methods that covers the following - [x] VectorData - [x] Vector Index - [x] ElementIdentifier - [x] DynamicTable - [x]...

cechava

convenience functions for icephys in schema 2.4

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Is there any plan to include in matnwb some convenience functions for the new icephys tables introduced by nwb-schema 2.4, such as those mentioned in the [pynwb tutorial](https://pynwb.readthedocs.io/en/stable/tutorials/domain/plot_icephys_pandas.html#converting-icephys-metadata-tables-to-pandas-dataframes) (e.g. `get_icephys_meta_parent_table`...

lvsltz

ecephys currently requires stats toolbox for random number generation

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bendichter

Create +types / namespaces folders in Matlab's temporary folder

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When calling nwbRead, there are two folders created in the pwd. This can be unexpected to the user, especially when the function is called somewhere under the hood (e.g., when...

jens-k

NWBDataInterface object in scratch

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I am using an [extension](https://github.com/lvsltz/ndx-bbp-icephys-hierarchy) to add groups of groups under `/scratch` to replicate the hierarchy of the [icephys extension](https://github.com/oruebel/ndx-icephys-meta). The [base container](https://github.com/lvsltz/ndx-bbp-icephys-hierarchy/blob/1c6054faef4a63ed59a288e774e47c50bfbabdee/src/spec/create_extension_spec.py#L78-L87) inherits from `NWBDataInterface`, yet MatNWB (but not...

lvsltz