Multiscale_PHATE
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KrishnaswamyLab
Creating multi-resolution embeddings and clusters from high dimensional data
Hello, I am working on scATACseq and I tried MS Phate. It seems that some of my clusters switch positions for different visualization layers. I know the ground truth labels...
Hi, Is it possible to include multiscale phate within R library? thank you
>>> tree = mp_op.build_tree() Calculating base visualization... Calculated base visualization in 0.01 seconds. Calculating tree... Calculated tree in 0.06 seconds. Traceback (most recent call last): File "", line 1, in...
I am trying to install the Multiscale_PHATE package on my Windows machine using pip, but the installation fails when preparing metadata with a UnicodeDecodeError. Here's the error message I receive:...
Hello, I am having trouble running multiscale phate using a dataset with size (>200000, 20). My code: " data = load_matrix('data_filename.txt') stats = load_vector('stations_filename.txt ') unigenes = load_vector('genes_filename.txt') df =...
Hi, Awesome package. This PR aims to bump the version number in version so that the latest package is installed via `pip`. Currently 0.0 is installed which misses key functionality...
Changed for-loop iteration over cluster name instead of its index in `clusters` This change fixed a bug that we were experiencing where the outputs of `visualize.get_visualization` had inconsistent dimensions.
Hi, I am not able to use MS PHATE with python 3.7. Reproducible example: ``` virtualenv --no-download phate_test_env # change path to env as needed source phate_test_env/bin/activate # load env...
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Creating multi-resolution embeddings and clusters from high dimensional data