Kimberly Meechan

This was an intermediate python course we ran internally at EMBL - the numpy section I wrote might be helpful for examples on pros/cons of numpy: https://grp-bio-it-workshops.embl-community.io/intermediate-python/02-data/index.html Repo here: https://git.embl.de/grp-bio-it-workshops/intermediate-python

Just to add that this is also common with scientists who mostly work with electron microscopy, or X-ray microscopy data. There are rarely RGB images. Some extra 'information boxes' are...

I'd agree with @adamltyson - it'd be great if all the loading functions were brought together in `brainglobe_utils.imageio.load`. This could be added to the [open PR on `brainglobe-utils`](https://github.com/brainglobe/brainglobe-utils/pull/67)?

I'll look into fixing this issue. While I'm looking at this, are there any other BrainGlobe packages that should be using html headers from `brainglobe-utils`?

Currently, the `cellfinder` header links to [one of the documentation pages for cellfinder](https://github.com/brainglobe/cellfinder/blob/main/cellfinder/napari/utils.py#L17C13-L17C97). The `brainglobe-utils` header currently [only supports linking to tutorials](https://github.com/brainglobe/brainglobe-utils/blob/main/brainglobe_utils/qtpy/logo.py#L16). Would you be happy to link to the...

The cellfinder [`train`](https://github.com/brainglobe/cellfinder/blob/de73504d42646a68314245f7b96010d8a5642e8f/cellfinder/napari/train/train.py#L43) and [`detect`](https://github.com/brainglobe/cellfinder/blob/de73504d42646a68314245f7b96010d8a5642e8f/cellfinder/napari/detect/detect.py#L42) widgets are still using `magicgui`, rather than `qtpy` directly like many of the other BrainGlobe widgets. This makes it difficult to re-use the brainglobe header...

All the BrainGlobe packages now use the same header from `brainglobe-utils`. Each of these would need a new release + a new release on the meta-package. Is it fine if...

Thanks for the clarification both! Ah I see - I was wondering why it still managed to open the image (without aicspylibczi), but it using bioformats makes a lot of...

Great - thanks @evamaxfield !

Sure! I'll probably have time to do this tomorrow, otherwise it'll be later this week.