pyPESTO issues

Release 0.2.14

1

* Ensembles: * Save and load weights and sigmay (#876) * Define relative cutoff (#855) * PEtab: * Pass problem kwargs via petab importer (#874) * Use `benchmark-models-petab` instead of...

PaulJonasJost

Move method.py functionalities to ui.py in petab_select

1

Doresic

Added the offset value to waterfall plot for better intuitive understanding.

1

PaulJonasJost

Failure to load HDF5 history from write-protected files

Since https://github.com/ICB-DCM/pyPESTO/pull/909 it's not possible to load History from write protected hdf5 files, because `Hdf5History._maybe_generate_hdf5_group` in `Hdf5History.__init__` always tries to open the file for appending.

dweindl

bug

fixed but not released

Use benchmark models petab

1

yannikschaelte

Added Pymc v4 Sampler (on hold)

2

This is to be able to use Apsara in combination with pymc. For now only a draft. TODO: - [x] Import for pymc via GitHub probably until official version is...

PaulJonasJost

Flaky test `test/sample/test_sample.py::test_samples_cis`

5

See https://github.com/ICB-DCM/pyPESTO/runs/7522438577?check_suite_focus=true ``` _______________________________ test_samples_cis _______________________________ def test_samples_cis(): """ Test whether :py:func:`pypesto.sample.calculate_ci_mcmc_sample` produces percentile-based credibility intervals correctly. """ # load problem problem = gaussian_problem() # set a sampler sampler =...

dweindl