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Published 20 hours ago • verified publisher icon ExpressionAnalysis

Using bam alignment

Open arichards2564 opened this issue 3 years ago • 0 comments

https://github.com/ExpressionAnalysis/STAR-SEQR/blob/8889bc879c647c2174c37ee4a69a27626814c22b/starseqr.py#L443-L446

I'm trying to use a pre-aligned bam and it errors here because it looks for sam file that doesn't exist. I believe this is a mistake. Do I need to have both the sam and bam file available?

arichards2564 avatar Mar 31 '22 02:03 arichards2564