envo

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add pattern for contamination

2

Fixes #1102 Opening PR for contamination pattern

wdduncan

obsolete: alga

1

http://purl.obolibrary.org/obo/ENVO_02500019 This is confusing as we would expect to find subtypes of alga here, but there are no subclasses The note says it should be ceded to pco, but it...

cmungall

Distinguish plant litter from leaf litter

4

Hi, Soil ecologists distinguish between plant litter and leaf litter, the latter being a subclass of the former : Plant litter = leaf litter+root litter+wood litter Suggestion : create a...

nleguillarme

PURLs for WWF ecoregions

10

Please create some dummy PURLs for the WWF ecoregions and export a table with the PURLs and the WWF ecoregion labels. There is moderate urgency. Thank you.

diatomsRcool

Need clarification on "bulk soil"

1

bulk soil [ENVO:00005802](https://www.ebi.ac.uk/ols/ontologies/envo/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_00005802) - _Soil that is not penetrated by the root systems of plants_ Is the name completely clear? Many people will look at the label and assume that...

cmungall

NASA is using ENVO and other OBO foundry terms for definitions of terms

8

Primarily in documents about their United Metadata Model (UMM) which is used in their Common Metadata Repository (CMR).. See https://wiki.earthdata.nasa.gov/download/attachments/49448405/EED2-TP-039_Rev03_UMM-Var.docx?version=1&modificationDate=1597956196634&api=v2

rduerr

New classes for soil texture categories

1

USDA uses its triangle technique to determine soil texture http://www.nrcs.usda.gov/Internet/FSE_MEDIA/nrcs142p2_050242.jpg - USDA triangle technique soil texture catagories: sand, loamy sand, sandy loam, sandy clay loam, sandy clay, loam, clay loam,...

celineaubert

After merging, transfer [percolation process in soil](http://purl.obolibrary.org/obo/AGRO_00000199) to ENVO. NOTE: Cannot make using pattern EA as parent process isn't in ENVO. closes #436

KrishnaTO

New class: cation area density in soil

3

# cation area density in soil - subclassOf `area density` http://purl.obolibrary.org/obo/PATO_0001351 - subclassOf inheres in `soil` - has_exact_synonym: `cation exchange capacity`, `CEC` - definition `Cation exchange capacity is a measure...

celineaubert

New class: volumetric water content in soil

3

# volumetric water content in soil - subclassOf `rate` http://purl.obolibrary.org/obo/PATO_0001470 (not sure of the subclassOf) - subclassOf inheres in `soil` - has_exact_synonym `volume wetness of soil water`, `volume fraction of...

celineaubert