ols4 icon indicating copy to clipboard operation
ols4 copied to clipboard

Published 20 hours ago • verified publisher icon EBISPOT

curie not a curie

Open jamesamcl opened this issue 1 year ago • 2 comments

https://www.ebi.ac.uk/ols4/api/v2/ontologies/idocovid19/properties/http%253A%252F%252Fwww.geneontology.org%252Fformats%252FoboInOwl%2523hasDbXref

"curie" : "hasDbXref",
"definedBy" : [ "oio" ],

I think the curie should be oio:hasDbXref. The above link is to the v2 api to show the issue in the database, but you can see it in the v1 api as short_form and obo_id:

https://www.ebi.ac.uk/ols4/api/ontologies/idocovid19/properties/http%253A%252F%252Fwww.geneontology.org%252Fformats%252FoboInOwl%2523hasDbXref

which I believe should be oio_hasDbXref and oio:hasDbXref respectively.

jamesamcl avatar May 01 '24 15:05 jamesamcl

According to @jamesamcl this is likely some logic issue in rdf2json :-)

henrietteharmse avatar May 01 '24 16:05 henrietteharmse

Specifically this file:

https://github.com/EBISPOT/ols4/blob/dev/dataload/rdf2json/src/main/java/uk/ac/ebi/rdf2json/annotators/ShortFormAnnotator.java

jamesamcl avatar May 01 '24 16:05 jamesamcl

fixed in production

haideriqbal avatar Sep 11 '24 23:09 haideriqbal