reg-gen
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CostaLab
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Hi all, I've seen a previous issue resolved with the same error, however I still get this error. I have aligned FASTQ files to the CHM13 genome (chm13v2.0.fa) using STAR....
Hello, I am getting "IndexError: cannot do a non-empty take from an empty axes." error and before that tools outputs this also : "Adding an axes using the same arguments...
configparser.NoOptionError: No option 'gene_regions' in section: 'hg38'
Hi all, as with #270 I created a mamba/conda environment as follows: ```bash $mamba create -n rgts -c bioconda rgt $mamba activate rgts ``` the python version is 3.7.12: ```bash...
Hi all, I created a mamba/conda environment as follows: ```bash mamba create -n rgts -c bioconda rgt mamba activate rgts ``` the python version is 3.7.12: ```bash python Python 3.7.12...
This a result from output of rgt-motifanalysis below 
When I run the rgt-hintdifferential, there are the following errors, how to solve them? signal generation is done! generating line plot for each motif... multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call...
Hello, I am trying to install TDF, however i am facing the following issue after running rgt-TDF promotertest rgt-TDF promotertest Traceback (most recent call last): File "/home/charbel/miniconda3/envs/bioinfo/bin/rgt-TDF", line 5, in...
Thank you for the great tool. I have a multi variable design in my experiment (treatments with several concentrations of a substance and multiple cell lines). For this reason I...
I was wondering how the P_value in the 11th column is calculated as most of them seem to be above 1.0 which is not a standard value, this is after...
