Carlos Moreno comments

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                                            Carlos Moreno

FileNotFoundError in Cleaning stage for absolute paths

Hi @SvenMarcus, have you had a chance to check this? :D

FileNotFoundError in Cleaning stage for absolute paths

Friendly ping @SvenMarcus :D

FileNotFoundError in Cleaning stage for absolute paths

I confirm it's working. Thank you @SvenMarcus 😄 , hpc-rocket is an excellent tool we are using in my team. Let me know if you need help updating the package...

FileNotFoundError in Cleaning stage for absolute paths

Yes @SvenMarcus , I'm really interested to help. I just check the compatibility with the other python versions, thanks for that!

White-labeling dbt docs

ChEBI OWL v1 and v2 both use http://www.geneontology.org/formats/oboInOwl#id that does not exist in that ontology file

Hi @JervenBolleman I'll do the necessary changes to use `oboInOwl#savedBy` and `oboInOwl#isCyclic`, however I'd need a bit of help to replace `oboInOwl#is_transitive` and `oboInOwl#id` properties (I doubled check and you're...

ChEBI OWL v1 and v2 both use http://www.geneontology.org/formats/oboInOwl#id that does not exist in that ontology file

After checking all the oboInOwl references, there are another two properties that don't exist: `oboInOwl#shorthand`, `#oboInOwl:source`. (See ChEBI ontology robot template sample [here](https://docs.google.com/spreadsheets/d/1i_D1b99Zgcwb5hQv2DipyBiyz2fwAekY7NSc4DnVmDM/edit?gid=270505634#gid=270505634))

Add more secondary identifiers into the ontology files

Hi @ntung I hope you are well. Thank you for opening this issue. Recently we have refactored many ontology aspects, they include the missing secondary ids for some compounds. Now,...

`robot convert` does not work for command pipelines

Hi @jamesaoverton I got the same bug using the `--prefix` option