wasabi

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Hi I am having issue with salmon converted files in sleuth. Error : File h5 has no bootstraps.Please generate bootstraps using "kallisto quant -b"

pragathisneha

Error in if (sum(valid) == 0) { : missing value where TRUE/FALSE needed

3

After seeing hdf5 issue fixed I have another problem, when I run ```R so

antonkulaga

Installation failed: error setting certificate verify locations

4

I am failing to install wasabi, and I don't understand why. ``` > biocLite("COMBINE-lab/wasabi") BioC_mirror: https://bioconductor.org Using Bioconductor 3.6 (BiocInstaller 1.28.0), R 3.4.3 (2017-11-30). Installing github package(s) ‘COMBINE-lab/wasabi’ Installation failed:...

fruce-ki

Hi Folks, I ran Salmon through (usegalaxy.org), saved the output files in separate folders as expected by wasabi. I just had a problem with prepare_fist_for_sleuth(sfdirs). I have never used wasabi...

LaryssaLeigh33

adelq

> biocLite("COMBINE-lab/wasabi") BioC_mirror: https://bioconductor.org Using Bioconductor 3.2 (BiocInstaller 1.20.3), R 3.2.3 (2015-12-10). Installing github package(s) ‘COMBINE-lab/wasabi’ Installation failed: Problem with the SSL CA cert (path? access rights?)

antonkulaga

Dear Authors, we're currently testing oarfish integration in our RNA quantification pipelines and we ran across a number of incompatibility issues due to oarfish output being formatted differently from Salmon...

katsikora