DelayedArray
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Bioconductor
A unified framework for working transparently with on-disk and in-memory array-like datasets
PeteHaitch/DelayedMatrixStats@9048f3e7a24035f3526a2ac0455598138e0c8480 causes https://github.com/Bioconductor/DelayedArray/blob/700cfdc38e0f97a67942963c1555d0fd83a7bc41/R/DelayedArray-utils.R#L868 to fail, for example: ```r library(DelayedArray) mat
A recent change in the DelayedArray stack (don't know exactly where) is causing **ScaledMatrix** tests to [break on Bioc-devel](https://master.bioconductor.org/checkResults/3.19/bioc-LATEST/ScaledMatrix/nebbiolo1-checksrc.html) with the rather unhelpful message: ```r Error in `validObject(.Object)`: invalid class...
It would be awosome if seedApply can recursely run based on the methods, for classes cannot be integrated with DelayedArray class, we cannot make `seedApply` work as usual as in...
Currently, `read_sparse_block()` returns the old `SparseArraySeed`, so I figured I would try updating some of my packages to the new SVT world. It seems `SparseArray::extract_sparse_array()` or `SparseArray::read_block_as_sparse()` are the replacements,...
I am trying to install GenomicFeatures but I received and error that seems to be related with the version of DelayedArray. I need version 0.26 but I cant load it...
Hello, We have R code that indirectly depends on DelayedArray and we have tests that run against the bioconductor devel branch. I realize devel isnt stable, but we just started...
I could have sworn this used to work. ```r library(DelayedArray) x
Upon a little experimentation, it seems the only thing preventing a big.matrix from the bigmemory package to be used as a Seed inside a DelayedArray is that dim() on a...
First, thanks for the package. It's exactly what we needed. We're working on neuroimaging data: https://github.com/muschellij2/niftiArray. We're trying to do statistics over multiple 3D arrays. I believe this doesn't fit...
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A unified framework for working transparently with on-disk and in-memory array-like datasets