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Published 20 hours ago • verified publisher icon Bhattacharya-Lab
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pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction

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Issues Encountered During Feature Generation

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Hi, I've encountered a couple of issues while generating features: It seems that the batch_save_msa_feat.py script is not compatible with the latest ColabFold 1.5.5. Could you please specify which version...

hkhkhove avatar hkhkhove

Unknown error uisng test data-set

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Hello. I want to use EquiPNAS to check my TF bing sites (picked up from RNA seq experiment). After creating the environment with conda, I downloaded the published models and...

kazumaxneo avatar kazumaxneo

train process issues

I repeated the training step and followed the scripts provided, but I found that the training loss rises suddenly. What could be the issue? Also, I noticed that the train_batch_size...

lingcon01 avatar lingcon01

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verified publisher icon Bhattacharya-Lab

Metadata

pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction

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