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Should the copy number segments be filtered before COPY NUMBER MATRIX GENERATION?

Open YingYa opened this issue 1 year ago • 0 comments

Hi,

I would like to run de novo extraction for copy number from a cancer cohort that contains both male and female. Should the copy number segments of chrX and chrY be filtered before COPY NUMBER MATRIX GENERATION? I have tried to find the processing details on the paper "Signatures of copy number alterations in human cancer", but got little.

YingYa avatar Jun 03 '24 10:06 YingYa