inception icon indicating copy to clipboard operation
inception copied to clipboard

Published 20 hours ago • verified publisher icon inception-project

Export in TSV failing on one file, the whole project cannot be exported

Open lfoppiano opened this issue 4 years ago • 16 comments

Describe the bug While exporting a project I received the following error: Unexpected error during project export: ProjectExportException: Aborting due to unrecoverable error while exporting!

The log point to a NullPointerException:

Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] LoggedEventExporter - Exported [5014] logged events for project [supercon-batch-7]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] LoggedEventExporter - Skipped [1557] logged events for [230] documents no longer existing
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] LayerExporter - Exported [18] layers for project [supercon-batch-7]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] PermissionsExporter - Exported [7] permissions for project [supercon-batch-7]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] TagSetExporter - Exported [4] tagsets for project [supercon-batch-7]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1020] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [993] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1021] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1022] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1023] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [998] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1024] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1000] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1025] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1026] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1027] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1045] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1029] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1030] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1031] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1032] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1033] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1034] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1035] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1036] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1037] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1038] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1039] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1040] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1041] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1042] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] SourceDocumentExporter - Exported content for source document [1043] in project [supercon-batch-7] with id [15]
Feb 15 10:19:14 falcon java[22160]: 2021-02-15 10:19:14 INFO [lfoppiano] ImportExportServiceImpl - Exported annotations [PR04310568-CC.superconductors.tsv](1020) for user [CURATION_USER] from project [supercon-batch-7](15) using format [ctsv3]
Feb 15 10:19:15 falcon java[22160]: 2021-02-15 10:19:15 INFO [lfoppiano] ImportExportServiceImpl - Exported annotations [PR0446999-CC.superconductors.tsv](993) for user [CURATION_USER] from project [supercon-batch-7](15) using format [ctsv3]
Feb 15 10:19:15 falcon java[22160]: 2021-02-15 10:19:15 INFO [lfoppiano] ImportExportServiceImpl - Exported annotations [PR04909084-CC.superconductors.tsv](1021) for user [CURATION_USER] from project [supercon-batch-7](15) using format [ctsv3]
Feb 15 10:19:15 falcon java[22160]: 2021-02-15 10:19:15 INFO [lfoppiano] ImportExportServiceImpl - Exported annotations [PR05003221-CC.superconductors.tsv](1022) for user [CURATION_USER] from project [supercon-batch-7](15) using format [ctsv3]
Feb 15 10:19:15 falcon java[22160]: 2021-02-15 10:19:15 INFO [lfoppiano] ImportExportServiceImpl - Exported annotations [PR05009672-CC.superconductors.tsv](1023) for user [CURATION_USER] from project [supercon-batch-7](15) using format [ctsv3]
Feb 15 10:19:15 falcon java[22160]: 2021-02-15 10:19:15 INFO [lfoppiano] ImportExportServiceImpl - Exported annotations [PR05511832-CC.superconductors.tsv](998) for user [CURATION_USER] from project [supercon-batch-7](15) using format [ctsv3]
Feb 15 10:19:15 falcon java[22160]: 2021-02-15 10:19:15 INFO [lfoppiano] ImportExportServiceImpl - Exported annotations [PR05514152-CC.superconductors.tsv](1024) for user [CURATION_USER] from project [supercon-batch-7](15) using format [ctsv3]
Feb 15 10:19:15 falcon java[22160]: 2021-02-15 10:19:15 INFO [lfoppiano] ImportExportServiceImpl - Exported annotations [PR05514733-CC.superconductors.tsv](1000) for user [CURATION_USER] from project [supercon-batch-7](15) using format [ctsv3]
Feb 15 10:19:15 falcon java[22160]: 2021-02-15 10:19:15 INFO [lfoppiano] ImportExportServiceImpl - Exported annotations [PR05703245-CC.superconductors.tsv](1025) for user [CURATION_USER] from project [supercon-batch-7](15) using format [ctsv3]
Feb 15 10:19:15 falcon java[22160]: 2021-02-15 10:19:15 INFO [lfoppiano] ImportExportServiceImpl - Exported annotations [PR05713422-CC.superconductors.tsv](1026) for user [CURATION_USER] from project [supercon-batch-7](15) using format [ctsv3]
Feb 15 10:19:15 falcon java[22160]: 2021-02-15 10:19:15 INFO [lfoppiano] ImportExportServiceImpl - Exported annotations [PR05809504-CC.superconductors.tsv](1027) for user [CURATION_USER] from project [supercon-batch-7](15) using format [ctsv3]
Feb 15 10:19:15 falcon java[22160]: 2021-02-15 10:19:15 INFO [lfoppiano] ImportExportServiceImpl - Exported annotations [PR05814581-CC.superconductors.tsv](1045) for user [CURATION_USER] from project [supercon-batch-7](15) using format [ctsv3]
Feb 15 10:19:15 falcon java[22160]: 2021-02-15 10:19:15 INFO [lfoppiano] ImportExportServiceImpl - Exported annotations [PR05814617-CC.superconductors.tsv](1029) for user [CURATION_USER] from project [supercon-batch-7](15) using format [ctsv3]
Feb 15 10:19:15 falcon java[22160]: 2021-02-15 10:19:15 INFO [lfoppiano] ImportExportServiceImpl - Exported annotations [PR05903948-CC.superconductors.tsv](1030) for user [CURATION_USER] from project [supercon-batch-7](15) using format [ctsv3]
Feb 15 10:19:15 falcon java[22160]: 2021-02-15 10:19:15 INFO [lfoppiano] ImportExportServiceImpl - Exported annotations [PR05907184-CC.superconductors.tsv](1031) for user [CURATION_USER] from project [supercon-batch-7](15) using format [ctsv3]
Feb 15 10:19:15 falcon java[22160]: 2021-02-15 10:19:15 ERROR [lfoppiano] PrimitiveAnalysisEngine_impl - Exception occurred
Feb 15 10:19:15 falcon java[22160]: org.apache.uima.analysis_engine.AnalysisEngineProcessException: Annotator processing failed.
Feb 15 10:19:15 falcon java[22160]: at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:406) [uimaj-core-3.1.1.jar!/:3.1.1]
Feb 15 10:19:15 falcon java[22160]: at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:299) [uimaj-core-3.1.1.jar!/:3.1.1]
Feb 15 10:19:15 falcon java[22160]: at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:272) [uimaj-core-3.1.1.jar!/:3.1.1]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.ImportExportServiceImpl.exportCasToFile(ImportExportServiceImpl.java:515) [webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.ImportExportServiceImpl.exportAnnotationDocument(ImportExportServiceImpl.java:251) [webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.ImportExportServiceImpl$$FastClassBySpringCGLIB$$256f1e29.invoke(<generated>) [webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.cglib.proxy.MethodProxy.invoke(MethodProxy.java:218) [spring-core-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.invokeJoinpoint(CglibAopProxy.java:779) [spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:163) [spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.proceed(CglibAopProxy.java:750) [spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:123) [spring-tx-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:388) [spring-tx-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:119) [spring-tx-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) [spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.proceed(CglibAopProxy.java:750) [spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.CglibAopProxy$DynamicAdvisedInterceptor.intercept(CglibAopProxy.java:692) [spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.ImportExportServiceImpl$$EnhancerBySpringCGLIB$$906905fd.exportAnnotationDocument(<generated>) [webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.export.exporters.CuratedDocumentsExporter.exportData(CuratedDocumentsExporter.java:145) [webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.export.ProjectExportServiceImpl.exportProject(ProjectExportServiceImpl.java:224) [webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.export.ProjectExportServiceImpl.exportProject(ProjectExportServiceImpl.java:168) [webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.export.ProjectExportServiceImpl$$FastClassBySpringCGLIB$$3d43e16f.invoke(<generated>) [webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.cglib.proxy.MethodProxy.invoke(MethodProxy.java:218) [spring-core-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.invokeJoinpoint(CglibAopProxy.java:779) [spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:163) [spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.proceed(CglibAopProxy.java:750) [spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:123) [spring-tx-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:388) [spring-tx-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:119) [spring-tx-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) [spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.proceed(CglibAopProxy.java:750) [spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.CglibAopProxy$DynamicAdvisedInterceptor.intercept(CglibAopProxy.java:692) [spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.export.ProjectExportServiceImpl$$EnhancerBySpringCGLIB$$32008b8f.exportProject(<generated>) [webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.export.ProjectExportFullProjectTask.export(ProjectExportFullProjectTask.java:46) [webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.export.ProjectExportTask_ImplBase.run(ProjectExportTask_ImplBase.java:79) [webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) [?:?]
Feb 15 10:19:15 falcon java[22160]: at java.util.concurrent.FutureTask.run(FutureTask.java:264) [?:?]
Feb 15 10:19:15 falcon java[22160]: at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) [?:?]
Feb 15 10:19:15 falcon java[22160]: at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) [?:?]
Feb 15 10:19:15 falcon java[22160]: at java.lang.Thread.run(Thread.java:834) [?:?]
Feb 15 10:19:15 falcon java[22160]: Caused by: java.lang.NullPointerException
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.tsv.internal.tsv3x.Tsv3XSerializer.writeRelationReference(Tsv3XSerializer.java:320) ~[webanno-io-tsv-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.tsv.internal.tsv3x.Tsv3XSerializer.writeValue(Tsv3XSerializer.java:267) ~[webanno-io-tsv-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.tsv.internal.tsv3x.Tsv3XSerializer.writeValues(Tsv3XSerializer.java:246) ~[webanno-io-tsv-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.tsv.internal.tsv3x.Tsv3XSerializer.write(Tsv3XSerializer.java:226) ~[webanno-io-tsv-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.tsv.internal.tsv3x.Tsv3XSerializer.write(Tsv3XSerializer.java:198) ~[webanno-io-tsv-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.tsv.internal.tsv3x.Tsv3XSerializer.write(Tsv3XSerializer.java:79) ~[webanno-io-tsv-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.tsv.WebannoTsv3XWriter.process(WebannoTsv3XWriter.java:67) ~[webanno-io-tsv-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48) ~[uimaj-core-3.1.1.jar!/:3.1.1]
Feb 15 10:19:15 falcon java[22160]: at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.lambda$callProcessMethod$3(AnalysisEngineImplBase.java:626) ~[uimaj-core-3.1.1.jar!/:3.1.1]
Feb 15 10:19:15 falcon java[22160]: at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.withContexts(AnalysisEngineImplBase.java:643) ~[uimaj-core-3.1.1.jar!/:3.1.1]
Feb 15 10:19:15 falcon java[22160]: at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.callProcessMethod(AnalysisEngineImplBase.java:623) ~[uimaj-core-3.1.1.jar!/:3.1.1]
Feb 15 10:19:15 falcon java[22160]: at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:381) ~[uimaj-core-3.1.1.jar!/:3.1.1]
Feb 15 10:19:15 falcon java[22160]: ... 38 more
Feb 15 10:19:15 falcon java[22160]: 2021-02-15 10:19:15 ERROR [lfoppiano] ProjectExportFullProjectTask - Unexpected error during project export
Feb 15 10:19:15 falcon java[22160]: de.tudarmstadt.ukp.clarin.webanno.api.export.ProjectExportException: Project export failed
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.export.ProjectExportServiceImpl.exportProject(ProjectExportServiceImpl.java:243) ~[webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.export.ProjectExportServiceImpl.exportProject(ProjectExportServiceImpl.java:168) ~[webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.export.ProjectExportServiceImpl$$FastClassBySpringCGLIB$$3d43e16f.invoke(<generated>) ~[webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.cglib.proxy.MethodProxy.invoke(MethodProxy.java:218) ~[spring-core-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.invokeJoinpoint(CglibAopProxy.java:779) ~[spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:163) ~[spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.proceed(CglibAopProxy.java:750) ~[spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:123) ~[spring-tx-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:388) ~[spring-tx-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:119) ~[spring-tx-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186) ~[spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.proceed(CglibAopProxy.java:750) ~[spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at org.springframework.aop.framework.CglibAopProxy$DynamicAdvisedInterceptor.intercept(CglibAopProxy.java:692) ~[spring-aop-5.3.3.jar!/:5.3.3]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.export.ProjectExportServiceImpl$$EnhancerBySpringCGLIB$$32008b8f.exportProject(<generated>) ~[webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.export.ProjectExportFullProjectTask.export(ProjectExportFullProjectTask.java:46) ~[webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.export.ProjectExportTask_ImplBase.run(ProjectExportTask_ImplBase.java:79) [webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) [?:?]
Feb 15 10:19:15 falcon java[22160]: at java.util.concurrent.FutureTask.run(FutureTask.java:264) [?:?]
Feb 15 10:19:15 falcon java[22160]: at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) [?:?]
Feb 15 10:19:15 falcon java[22160]: at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) [?:?]
Feb 15 10:19:15 falcon java[22160]: at java.lang.Thread.run(Thread.java:834) [?:?]
Feb 15 10:19:15 falcon java[22160]: Caused by: de.tudarmstadt.ukp.clarin.webanno.api.export.ProjectExportException: Aborting due to unrecoverable error while exporting!
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.export.exporters.CuratedDocumentsExporter.exportData(CuratedDocumentsExporter.java:154) ~[webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: at de.tudarmstadt.ukp.clarin.webanno.api.dao.export.ProjectExportServiceImpl.exportProject(ProjectExportServiceImpl.java:224) ~[webanno-api-dao-4.0.0-beta-22.jar!/:?]
Feb 15 10:19:15 falcon java[22160]: ... 20 more
Feb 15 10:19:16 falcon java[22160]: 2021-02-15 10:19:16 ERROR [lfoppiano] ApplicationPageBase - lfoppiano: Unexpected error during project export: ProjectExportException: Aborting due to unrecoverable error while exporting!
Feb 15 10:19:16 falcon java[22160]: 2021-02-15 10:19:16 ERROR [lfoppiano] ApplicationPageBase - lfoppiano: Project export failed

This issue occurs only with TSV export.

To Reproduce I'm not sure how to provide you the data for reproduce it

Expected behaviour Maybe export what can be exported and ignore the rest?

Please complete the following information:

  • Version and build ID: 0.18.1 (2021-02-10 23:33:09, build d108e4b5)
  • OS: Linux
  • Browser: Chrome / Firefox

lfoppiano avatar Feb 15 '21 01:02 lfoppiano

Looking at the code that throws the exception, I would say that there is a relation that has dangling endpoints.

Please try running the CAS Doctor over the project. It should report this type of inconsistency and there should be a repair action that you can perform. It is a good idea to create a backup of the project (export as XMI or binary CAS) before applying CAS Doctor repairs.

reckart avatar Feb 15 '21 07:02 reckart

There is an option to activate the CAS doctor on every single load and save action to fail immediately if an action is about to cause an inconsistency or to immediately detect inconsistent files when opening them - but it may significantly slow down the application.

If you want to try, you could add this option to your settings.properties file:

debug.casDoctor.checks=AllFeatureStructuresIndexedCheck

reckart avatar Feb 15 '21 08:02 reckart

Thanks @reckart, after exporting a backup of the project, I ran the check CasDoctor and indeed there is some sort of problem:

PR05909642-CC.superconductors.tsv [CURATION_USER]
--
ERROR | AllFeatureStructuresIndexedCheck | Unindexed feature structures: 2
ERROR | AllFeatureStructuresIndexedCheck | Non-indexed feature structure [Supercon:70125    sofa: _InitialView    begin: 4735    end: 4739    extra_tag: <null>    supercon_tag: "tcValue"] reachable through [Supercon_link:70575    sofa: _InitialView    begin: 4782    end: 4794    Dependent: Supercon:70131       sofa: _InitialView       begin: 4782       end: 4794       extra_tag: <null>       supercon_tag: "material"    Governor: Supercon:70125       sofa: _InitialView       begin: 4735       end: 4739       extra_tag: <null>       supercon_tag: "tcValue"    relationships: "tcValue-material"]
ERROR | AllFeatureStructuresIndexedCheck | Non-indexed feature structure [Supercon:70131    sofa: _InitialView    begin: 4782    end: 4794    extra_tag: <null>    supercon_tag: "material"] reachable through [Supercon_link:70575    sofa: _InitialView    begin: 4782    end: 4794    Dependent: Supercon:70131       sofa: _InitialView       begin: 4782       end: 4794       extra_tag: <null>       supercon_tag: "material"    Governor: Supercon:70125       sofa: _InitialView       begin: 4735       end: 4739       extra_tag: <null>       supercon_tag: "tcValue"    relationships: "tcValue-material"]

but then when I try to fix it, I get:

PR05909642-CC.superconductors.tsv [CURATION_USER]
--
ERROR | ProjectCasDoctorPanel | Error checking annotations for [CURATION_USER] for  [PR05909642-CC.superconductors.tsv]: Repair attempt failed - ask system  administrator for details.

I tried to locate the exception in the log file, but I'm not sure I'm reporting the right part, as the exception is very long. It seems WriteAccess exception, although the document has been unlocked from the curation part.

I think I will not enable the check as it might slow down the application user experience

lfoppiano avatar Feb 15 '21 09:02 lfoppiano

Problem reported with the CAS doctor repair action may be a duplicate of #1788.

reckart avatar Feb 15 '21 21:02 reckart

ah I see. I would go around this by removing the document.

lfoppiano avatar Feb 16 '21 00:02 lfoppiano

I would love to debug and fix this - unfortunately, I haven't been able yet to reproduce it locally...

reckart avatar Feb 16 '21 07:02 reckart

@reckart no problem, I can share you the project. I left in just the problematic file..

copy_of_supercon-batch-7_project_2021-02-17_0915.zip

Let me know if it's enough

lfoppiano avatar Feb 17 '21 00:02 lfoppiano

We hopefully have a fix restoring the ability to repair CASes and hopefully not breaking anything else incoming here: https://github.com/inception-project/inception/pull/2005

reckart avatar Feb 17 '21 00:02 reckart

Would be cool if we could figure out why the dangling relation turned up in the first place though...

reckart avatar Feb 17 '21 00:02 reckart

I'm going to try to find out, although I doubt non-technical people know what they are doing when they annotate ;-)

lfoppiano avatar Feb 17 '21 02:02 lfoppiano

I've been going through the log and I've seen two main things:

  1. concurrent modification errors while annotating (although the annotation version of the document is fine), although after that I had exported the project for backup and it worked.
  2. no exception when the curator was working on this document, see log below:
Feb 09 10:20:45 falcon java[19336]: 2021-02-09 10:20:45 INFO [pedro] AnnotationSchemaServiceImpl - Upgraded CAS of user [CURATION_USER] for document [PR05909642-CC.superconductors.tsv](1032) in project [supercon-batch-7](15)
Feb 09 10:21:01 falcon java[19336]: 2021-02-09 10:21:01 INFO [pedro] ApplicationPageBase - pedro: The [supercon] annotation has been deleted.
Feb 09 10:22:27 falcon java[19336]: 2021-02-09 10:22:27 INFO [pedro] ApplicationPageBase - pedro: The attached annotation for relation type [supercon_link] has been deleted
Feb 09 10:22:27 falcon java[19336]: 2021-02-09 10:22:27 INFO [pedro] ApplicationPageBase - pedro: The [supercon] annotation has been deleted.
Feb 09 10:43:51 falcon java[19336]: 2021-02-09 10:43:51 INFO [pedro] ApplicationPageBase - pedro: The [supercon] annotation has been deleted.
Feb 09 10:50:50 falcon java[19336]: 2021-02-09 10:50:50 INFO [pedro] ApplicationPageBase - pedro: The [supercon] annotation has been deleted.
Feb 09 10:55:03 falcon java[19336]: 2021-02-09 10:55:03 INFO [pedro] ApplicationPageBase - pedro: The [supercon] annotation has been deleted.
Feb 09 10:55:07 falcon java[19336]: 2021-02-09 10:55:07 INFO [pedro] ApplicationPageBase - pedro: The [supercon] annotation has been deleted.
Feb 09 11:11:57 falcon java[19336]: 2021-02-09 11:11:57 INFO [pedro] ApplicationPageBase - pedro: The [supercon] annotation has been deleted.
Feb 09 11:20:50 falcon java[19336]: 2021-02-09 11:20:50 INFO [pedro] ApplicationPageBase - pedro: The [supercon] annotation has been deleted.
Feb 09 11:20:59 falcon java[19336]: 2021-02-09 11:20:59 INFO [pedro] ApplicationPageBase - pedro: The [supercon] annotation has been deleted.
Feb 09 11:43:53 falcon java[19336]: 2021-02-09 11:43:53 INFO [pedro] ApplicationPageBase - pedro: The [supercon_link] annotation has been deleted.

Not sure if this can help much

lfoppiano avatar Feb 17 '21 02:02 lfoppiano

The saving of all annotations on a document happens atomically - kind of like in a transaction. So if there are two people saving concurrently, one wins with all their annotation and the other one loses and gets the concurrent modification error (if that is the kind of concurrent modification exception from the CAS storage we are talking about).

However, you could try adding -Dwebanno.debug.enforce_cas_thread_lock=true while starting the server which installs an extra safeguard to check that no two threads are trying to concurrently access the CAS. If such an access would be detected, the safeguard generates an error. This is something we tend to have enabled while developing to detect any potential concurrent accesses, but it is not enabled by default. There is no significant performance overhead.

The most probably cause for a dangling relation is that while deleting a span, the application did not discover all relations that connect to this span. Might be a classic case for implementing a (randomizing) test-case...

reckart avatar Feb 17 '21 08:02 reckart

@reckart OK. Thanks! I'm going to run it with that opeion enabled.

lfoppiano avatar Feb 18 '21 05:02 lfoppiano

I've updated to 0.19.0, at the same time I've got few more problems in exporting, as described above. I ran the CAS check, and it found out

ERROR | AllFeatureStructuresIndexedCheck | Unindexed feature structures: 2
-- | -- | --
ERROR | AllFeatureStructuresIndexedCheck | Non-indexed feature structure [Supercon:218237    sofa: _InitialView    begin: 3768    end: 3774    extra_tag: <null>    supercon_tag: "tcValue"] reachable through [Supercon_link:220489    sofa: _InitialView    begin: 3768    end: 3774    Dependent: Supercon:218237       sofa: _InitialView       begin: 3768       end: 3774       extra_tag: <null>       supercon_tag: "tcValue"    Governor: Supercon:218243       sofa: _InitialView       begin: 3786       end: 3799       extra_tag: <null>       supercon_tag: "pressure"    relationships: "pressure-tcValue"]
ERROR | AllFeatureStructuresIndexedCheck | Non-indexed feature structure [Supercon:218243    sofa: _InitialView    begin: 3786    end: 3799    extra_tag: <null>    supercon_tag: "pressure"] reachable through [Supercon_link:220489    sofa: _InitialView    begin: 3768    end: 3774    Dependent: Supercon:218237       sofa: _InitialView       begin: 3768       end: 3774       extra_tag: <null>       supercon_tag: "tcValue"    Governor: Supercon:218243       sofa: _InitialView       begin: 3786       end: 3799       extra_tag: <null>       supercon_tag: "pressure"    relationships: "pressure-tcValue"]

Then I ran the CAS repair, I selected even the last option :

image

The process run through and it states "CAS" updated: image

however, when I try to export again the documents: image (here it does not say which documents are failing - which would be nice to know)

I'm attaching the project exported with UIMA binary CAS containing only the documents that are failing.

copy_of_supercon-batch-8_project_2021-03-23_0823.zip

One more thing, if I go to the curation page and try to export the curation version of a "damaged" document, I will end up to the 505 page of the application:

image

I'm adding the exception here:

java.lang.NullPointerException
	at de.tudarmstadt.ukp.clarin.webanno.ui.core.page.ProjectPageBase.requireProjectRole(ProjectPageBase.java:67)
	at de.tudarmstadt.ukp.clarin.webanno.ui.curation.page.CurationPage.<init>(CurationPage.java:169)
 [wrapped] java.lang.reflect.InvocationTargetException
	at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
	at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
	at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
	at org.apache.wicket.session.DefaultPageFactory.newPage(DefaultPageFactory.java:171)
 [wrapped] org.apache.wicket.WicketRuntimeException: Can't instantiate page using constructor 'public de.tudarmstadt.ukp.clarin.webanno.ui.curation.page.CurationPage(org.apache.wicket.request.mapper.parameter.PageParameters)' and argument ''. An exception has been thrown during construction!
	at org.apache.wicket.session.DefaultPageFactory.newPage(DefaultPageFactory.java:194)
	at org.apache.wicket.session.DefaultPageFactory.newPage(DefaultPageFactory.java:76)
	at org.apache.wicket.DefaultMapperContext.newPageInstance(DefaultMapperContext.java:90)
	at org.apache.wicket.core.request.handler.PageProvider$Provision.getPage(PageProvider.java:369)
	at org.apache.wicket.core.request.handler.PageProvider.getPageInstance(PageProvider.java:170)
	at org.apache.wicket.request.handler.render.PageRenderer.getPage(PageRenderer.java:78)
	at org.apache.wicket.request.handler.render.WebPageRenderer.respond(WebPageRenderer.java:231)
	at org.apache.wicket.core.request.handler.RenderPageRequestHandler.respond(RenderPageRequestHandler.java:202)
	at org.apache.wicket.request.cycle.RequestCycle$HandlerExecutor.respond(RequestCycle.java:906)
	at org.apache.wicket.request.RequestHandlerExecutor.execute(RequestHandlerExecutor.java:63)
	at org.apache.wicket.request.cycle.RequestCycle.execute(RequestCycle.java:293)
	at org.apache.wicket.request.cycle.RequestCycle.processRequest(RequestCycle.java:254)
	at org.apache.wicket.protocol.http.WicketFilter.processRequestCycle(WicketFilter.java:277)
	at org.apache.wicket.protocol.ws.AbstractUpgradeFilter.processRequestCycle(AbstractUpgradeFilter.java:67)
	at org.apache.wicket.protocol.http.WicketFilter.processRequest(WicketFilter.java:208)
	at org.apache.wicket.protocol.http.WicketFilter.doFilter(WicketFilter.java:307)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.springframework.orm.jpa.support.OpenEntityManagerInViewFilter.doFilterInternal(OpenEntityManagerInViewFilter.java:186)
	at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at de.tudarmstadt.ukp.clarin.webanno.support.logging.LoggingFilter.doFilter(LoggingFilter.java:60)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at de.tudarmstadt.ukp.clarin.webanno.api.dao.casstorage.OpenCasStorageSessionForRequestFilter.doFilter(OpenCasStorageSessionForRequestFilter.java:50)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:327)
	at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:115)
	at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:81)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:336)
	at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:119)
	at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:113)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:336)
	at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:126)
	at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:81)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:336)
	at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:105)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:336)
	at org.springframework.security.web.authentication.rememberme.RememberMeAuthenticationFilter.doFilter(RememberMeAuthenticationFilter.java:101)
	at org.springframework.security.web.authentication.rememberme.RememberMeAuthenticationFilter.doFilter(RememberMeAuthenticationFilter.java:92)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:336)
	at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:149)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:336)
	at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:63)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:336)
	at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:103)
	at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:89)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:336)
	at org.springframework.security.web.header.HeaderWriterFilter.doHeadersAfter(HeaderWriterFilter.java:90)
	at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:75)
	at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:336)
	at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:110)
	at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:80)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:336)
	at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:55)
	at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119)
	at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:336)
	at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:211)
	at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:183)
	at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:358)
	at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:271)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:100)
	at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.springframework.web.filter.FormContentFilter.doFilterInternal(FormContentFilter.java:93)
	at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:201)
	at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:202)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:97)
	at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:542)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:143)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:78)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:343)
	at org.apache.coyote.ajp.AjpProcessor.service(AjpProcessor.java:432)
	at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65)
	at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:888)
	at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1597)
	at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
	at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
	at java.base/java.lang.Thread.run(Thread.java:834)

lfoppiano avatar Mar 22 '21 23:03 lfoppiano

For me, the issue that you have can be fixed with the RemoveDanglingRelationsRepair action from the CAS doctor. You probably have to scroll down in the "active repairs" list to see it - some browsers / OSes may not show a scroll bar by default.

reckart avatar Mar 23 '21 14:03 reckart

ahh, I did not realise there were more options... indeed that fixed the problem.

lfoppiano avatar Mar 23 '21 23:03 lfoppiano