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Published 20 hours ago • verified publisher icon inab

Any plans for multi-threading support in trimAl ?

Open tseemann opened this issue 9 years ago • 2 comments

Are there any plans to support multi-threading?

I understand it is not trivial to implement, but OpenMP pragmas could make it easy to parallelize parts of the code that loop over columns because they are independent operations?

I work on DNA alignments with 5,000,000 columns and 100s of rows, and most operations are surprisingly slow.

tseemann avatar Apr 04 '15 22:04 tseemann

So far I haven't plan anything in this direction. However, I'm open to collaborate with you implementing this functionality.

scapella avatar Apr 05 '15 12:04 scapella

Do you have any progress on multi-threading?

cahuparo avatar Oct 19 '22 20:10 cahuparo