WfExS-backend
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inab
Workflow Execution Service Backend
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` WfExS-backend init` should create valid yaml configuration files when `--cache-dir` parameter is provided. Also, it should validate already existing configuration files against the corresponding JSON schema. An example of...
Right now, when a prospective RO-Crate is generated, `dot` is used to translate the workflow representation generated by the workflow engine into a PNG. When the command is not available...
# Description Using `stage` I can stage a workflow with podman. However running the workflow with `staged-workdir offline-exec` I get the following error: ``` ERROR Workflow error: Docker is not...
# Description When staging a workflow for the first time as non-sudo/root user I'm getting the error in the title. Oddly, deleting the cache dir and re-running the `stage` command...
# Background My team would like to use WfExS in Trusted Research Environment (TRE) which has data sources which can't be exposed to the outside world. We anticipate that the...
# Description I am running WfExS with the config files shown below. When I run `WfExS-backend.py -L local-config.yml stage -W test-stage.yml` I get the following error: `NotADirectoryError: [Errno 20] Not...
The target here is just WfExS-backend should be able to consume its own RO-Crates, demonstrating true reproducibility. This feature is divided in two milestones: * Being able to reuse as...
See [WfExS possible RO-Crate profiles](https://docs.google.com/document/d/1ALo0yQITwrzvmRPGzNqdG3zstr0XZ1FSliBjU2CNNwY/edit#) captured by @lrodrin @jmfernandez We should gather some example outputs and first look how far we get with using https://www.researchobject.org/ro-crate/1.1/provenance.html Also see https://www.researchobject.org/ro-crate/1.2-DRAFT/profiles.html
Thanks to the tests from @dcl10 some issues have been uncovered related to workflows which depend on container images which are not available for the current processor architecture. A way...