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Add hypersec_n pulse type and overdrive factor to make_adiabatic_pulse and include inversion pulses in rf_times

Open markus-zimmermann opened this issue 9 months ago • 1 comments

Following https://github.com/imr-framework/pypulseq/discussions/250. I've tried to add a meaningful test function.

markus-zimmermann avatar Feb 20 '25 15:02 markus-zimmermann

Coverage

Coverage Report
FileStmtsMissCoverMissing
/home/runner/.local/lib/python3.12/site-packages/pypulseq
   add_gradients.py1235159%44, 52, 58, 61, 75–86, 92, 120–123, 130–131, 150, 157, 162–241
   add_ramps.py36360%1–89
   align.py35489%41, 45, 69, 73
   calc_duration.py25196%37
   calc_ramp.py2182142%45–353
   calc_rf_bandwidth.py272026%37–59, 63–67
   check_timing.py872769%72, 76, 99, 192, 199, 209–253
   compress_shape.py30197%28
   convert.py40880%42, 48, 66, 72–73, 82, 88–89
   event_lib.py961485%6–9, 48–51, 70–71, 205–210
   make_adc.py921386%63, 72–76, 79, 128, 131, 135, 141, 145, 184, 186, 188, 196
   make_adiabatic_pulse.py1363971%220–224, 241–245, 253–254, 277, 283, 352–371, 475–484, 522–530
   make_arbitrary_grad.py363017%66–104
   make_arbitrary_rf.py665517%83–160
   make_block_pulse.py46393%112–116, 119
   make_delay.py9189%27
   make_digital_output_pulse.py16288%39, 47
   make_extended_trapezoid.py561475%67, 70, 76, 82, 85, 88, 91, 94, 104–105, 116, 134, 136, 139
   make_extended_trapezoid_area.py92397%48, 221, 224
   make_gauss_pulse.py692071%127–131, 134–158, 165, 168
   make_label.py19384%36, 41, 43
   make_sigpy_pulse.py1203174%12–13, 112, 115, 119, 154, 157–161, 165, 168–169, 172–173, 188, 200, 205, 217, 220, 245–255, 269, 272, 302–312
   make_sinc_pulse.py681085%94, 100, 127–131, 135, 138–139, 142–143, 165
   make_trapezoid.py111794%177, 190, 196, 214, 232, 237, 255
   make_trigger.py16288%44, 52
   opts.py66986%78, 83, 102, 142, 166–170
   points_to_waveform.py9722%23–38
   rotate.py691480%15, 55, 66–69, 85–90, 112, 119–120
   scale_grad.py14471%28–30, 33
   sigpy_pulse_opts.py26773%34–41
   split_gradient.py393121%46–103
   split_gradient_at.py702761%63–90, 110, 114, 118–120, 154–156
   traj_to_grad.py13931%26–40
/home/runner/.local/lib/python3.12/site-packages/pypulseq/SAR
   SAR_calc.py1139813%33–40, 55–62, 89–108, 129–132, 168–212, 242–246, 264–306
/home/runner/.local/lib/python3.12/site-packages/pypulseq/Sequence
   block.py3683291%59, 62, 70, 76, 91, 99, 105, 116, 119, 122, 130, 135, 144, 196, 245, 249, 265, 305–308, 337–338, 404, 410, 430, 499, 535, 541, 568, 606, 640
   calc_grad_spectrum.py81766%68–190
   calc_pns.py403122%45–96
   ext_test_report.py1401192%23, 58, 61, 135, 227–233
   install.py754244%31, 52, 69, 71, 112–131, 148, 181–184, 200–212, 254–278
   parula.py4250%19–86
   read_seq.py3126878%42–43, 90, 93, 105, 110, 116, 123, 132, 141, 146, 149, 157–159, 192, 197, 205–254, 284–287, 302–303, 332–349, 412, 415, 450, 458, 532, 574–578
   sequence.py73121770%11–14, 101–111, 132–145, 183, 248–251, 292, 319, 336, 384, 412, 439–444, 481, 497, 588, 610, 651–654, 708, 740, 751–752, 758, 769, 775, 777, 785, 818–826, 847–869, 912, 914, 917, 943–944, 947–950, 986–996, 1034–1035, 1071–1072, 1098, 1104, 1107, 1144, 1271–1284, 1310, 1350, 1372–1374, 1395, 1426, 1437–1450, 1462–1473, 1519–1520, 1529–1547, 1571, 1601–1609, 1641–1751, 1780, 1794–1804, 1816
   write_seq.py172895%41, 65, 68–75
/home/runner/.local/lib/python3.12/site-packages/pypulseq/utils
   cumsum.py14193%17
   safe_pns_prediction.py12611310%50–87, 102–189, 197–214, 222, 244–250, 279–286, 310–336, 344–383, 396–411, 415
   tracing.py16662%33–34, 42, 54–55, 75
/home/runner/.local/lib/python3.12/site-packages/pypulseq/utils/siemens
   asc_to_hw.py58539%21–28, 48–106
   readasc.py48456%25–100
TOTAL4375152065% 

Tests Skipped Failures Errors Time
1186 18 :zzz: 0 :x: 0 :fire: 2m 47s :stopwatch:

github-actions[bot] avatar Feb 24 '25 09:02 github-actions[bot]