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Improve PRS computation

Open leonschuetz opened this issue 2 months ago • 1 comments

  • [ ] allow reference base to be effect allele (required for some lifted SNPs)
    • [ ] adapt megSAP conversion script
    • [ ] adapt VcfCalculatePRS to handle this case (- [ ] check VcfCheck)
  • [ ] add additional output for VcfCalculatePRS to export TSV with all found variants, allele counts...
  • [ ] adapt calculate_prs_distribution.php to exclude certain disease groups

leonschuetz avatar Apr 19 '24 09:04 leonschuetz

  • [ ] PGS file format not valid
    • [ ] validation of all variants where AF doesn't match

leonschuetz avatar Apr 25 '24 10:04 leonschuetz