infercnvpy icon indicating copy to clipboard operation
infercnvpy copied to clipboard

Published 20 hours ago • verified publisher icon icbi-lab

HMM-based CNV caller

Open grst opened this issue 4 years ago • 2 comments

inferCNV uses a hidden markov model to turn the smoothed gene expression into genomic regions that are subject to CNV.

Would be nice to implement a similar feature here.

grst avatar Feb 03 '21 15:02 grst

Hello: This package performs very well, is there any progress on HMM?

Liripo avatar Jun 25 '24 05:06 Liripo

I'm happy to accept a pull request that enables some sort of segmentation, but I don't have the time to implement it myself.

grst avatar Jun 25 '24 06:06 grst