ibseq

this is from R2: one thing I noticed is that there are 10bp a the beginning of the read, I run citeseq count with -trim 10 but no difference: @K00345:113:H5KGNBBXY:3:1101:1418:1138...

is anyone going to pick this up ??...having the same issue :)

Hi Hyun, This is what I had done from instructions in https://github.com/samtools/htslib and https://github.com/statgen/demuxlet . In yellow the commands, bottom red, the error. As you can see, demuxlet is in...

Hi Hyun, The first two work, the last doesn’t Just to make sure I understood: I cloned htslib first and follow instruction to install it. In the same folder I...

Hi Hyun, I did all the below. See attached. I also upgraded gcc at is seemed the prob but still nothing BW Irene > On 29 Apr 2019, at 13:37,...

HI there I just had chance now to use bracer with my now results. I tried to run the test as well but I’m stuck with the original issue, config...

HI it says there is no config file in the path indicated. what i have tried was to copy it from the website and created and saved it where is...

Hi Ida, here it is: I’m running it very simple bracer assemble 1R1.fastq.gz 1R2.fastq.gz Config file not found at ~/.bracerrc. Using default bracer.conf in repo... Please specify the path to...

and config file is where is supposed to be: just see top list /home/ibassano/anaconda3/envs/BRACER/lib/python3.6/site-packages$ ll 4096 May 14 2018 Bio 4096 May 14 2018 biopython-1.71-py3.6.egg-info 4096 May 14 2018 BioSQL...

latest error with same command. I adjusted the cons file to just indicate the path Traceback (most recent call last): File "/home/ibassano/anaconda3/envs/BRACER/bin/bracer", line 11, in load_entry_point('bracer==0.1', 'console_scripts', 'bracer')() File "/home/ibassano/anaconda3/envs/BRACER/lib/python3.6/site-packages/bracerlib/launcher.py",...