Ian Taylor
Ian Taylor
@lisaailloud-NOAA requested more detailed output that would be straightforward to add within `SS_output()` as discussed in https://github.com/nmfs-stock-synthesis/stock-synthesis/issues/263.
This may be mostly specific to U.S. West Coast assessments. As discussed in https://github.com/iantaylor-NOAA/Lingcod_2021/issues/73#issuecomment-898895633, issues in the forecast settings are often found when John DeVore notes that the ratio of...
Thanks to Teresa A'mar for input on this. Need to add display of wtatage matrix by season and include writing to PNG files for those figures.
Bug found by Huihua Lee for time-varying movement calculations with > 2 areas. Current code loops over movement definitions. It should instead loop over source areas because rates are scaled...
SPAY plots ("standardized proportion at age", which seems like it should be SPAA) show catch at age proportions relative to the average proportion at age across years. Equations and example...
Idea from @puntae at the CAPAM workshop on diagnostics: For models without a sum-to-zero constraint on main recdevs, it would be good to see if the average recdev is moving...
The slide below from the ongoing CAPAM diagnostics workshop led to consensus that these CAAL diagnostic plots should be made sex-specific. Also some users would like to see the plots...
The `SSplotSexRatio` function written by @colemonnahan in 2015 wasn't working for SS version 3.30 models. Thanks to Ian Stewart reporting it, this is now working in commit dc0adf1bbacf0dc06c9911b38546769757e28e55 in both...
SS_changepars() is proving useful, but now that I understand better regular expressions, I'm annoyed that it's hardwired to use fixed = FALSE: https://github.com/r4ss/r4ss/blob/6617a9848da16392784080cc1bb6bda2d3dd067c/R/SS_changepars.R#L133-L134 It's set that way because of parameters...
@chantelwetzel-noaa wisely pointed out that it would be useful to control y-axis limits for plots like these (where here she added a horizontal line at the 34 cm in each...