Ian Taylor

add HTML view for SSplotComparisons()

1

There have been a few recent suggested changes to `SSplotComparisons()` including - #508 (selectivity), - #524 (summary biomass), - #527 (total mortality). As the number of figures increases, it could...

expand testing via testthat

5

@kellijohnson-NOAA added new tests in https://github.com/r4ss/r4ss/blob/development/tests/testthat/test_profile.R of functions that are used by `SS_profile`. The `SS_profile` function itself was included in a set of tests in https://github.com/r4ss/r4ss/blob/master/tests/testthat/test_runs.R that require the SS...

[Feature]: show growth across seasons, refine for settlement events

2

### Describe the feature request. Thanks to @MartaCousido, for asking why the growth plot was not showing the linear growth ending at the non-integer value for Amin. The figure clip...

### Describe the feature request. As noted by @MOshima-PIFSC in https://github.com/PIFSCstockassessments/ss3diags/issues/106, it would be good to always have a readable name for the parameters being profiled over. The current function...

The r4ss package was slow to adopt any tidyverse stuff (because I was slow to learn it), but since January 2023 has depended on {dplyr} and {magrittr} and now has...

[Feature]: add read of new "maximum_ASEL2" output added for next SS3 version

1

### Describe the feature request. New table being produced by these lines should be read by `SS_output()` https://github.com/nmfs-stock-synthesis/stock-synthesis/blob/main/SS_write_report.tpl#L2935-L2937 This information could be helpful to quickly flag any fleets where the...

[Feature]: add figure showing correlation among indices

1

### Describe the feature request. Figure below from the recent review of Oregon Black Rockfish (copied from https://pam.pcouncil.org/documents/request_response_oregonblackrf_star2_071123-pdf/) shows a comparison of indices that was created by @aaronmberger-nwfsc using the...

[Feature]: support running models in parallel

3

### Describe the feature request. As noted in https://github.com/r4ss/r4ss/pull/736#issue-1327885562, the `r4ss::run()` function no longer supports running multiple models because it was simpler to avoid looping over multiple folders. However, we...

document process by which figs and tables get added to html, facilitate posting to github pages.

6

## Background GitHub Pages allows anyone with a github account to post any files to the web, including the r4ss html. See https://r4ss.github.io/r4ss/BigSkate/ for example and https://pages.github.com/ for info on...

The `SSplotComparisons()` function includes an `legendncol` argument to change the number of columns for the legend. It would probably be a good idea to include this in more places, such...