Ian Hunt-Isaak

oooh, and even better than fixing that small part of image_segmenter. The project should be reconfigured to make use of the `image_segmenter` from mpl-interactions which is an improved version of...

If https://github.com/ianhi/AC295-final-project-JWI/issues/4 is fully implemented it will supercede this issue.

Hi @vprahalad from looking at your "True mask" it seems you are using a continuous variable for your mask. For this model we used categorical variables - e.g. 0 for...

Hi @hxngillani those are where the mask data are stored. They show up as black when you look at them because they only hold the class data for each pixel....

@MBelkhechine good question. They are actually stored as black and white images so the arrays have shape `(450, 450)`. You can check this by opening one up using `skimage.io.imread`: ```python...

Can you try this in a notebook but with a different interactive backend? To achieve this use `%matplotlib qt` in place of the `%matplotlib widget`, you will also need to...

> So, i think we should think about whether it should be the responsibility of something else (either a viewer or a writer) to actually call getImage() Is there a...

> An entry point certainly would be one way to accomplish this, but i feel like this was largely added as a hook specifically for pycromanager Oh interesting. I actually...

> I think we need to tighten it up significantly, where the plugin just has to do things like prep_hardware, or acquire, or, indeed, write_image. Absolutely agree, this has been...

oh i just added instructions for this! It's definitely not as easy... https://github.com/micro-manager/mmCoreAndDevices#building-on-mac-and--linux