CellDesigner import throws an error

[nasimsaleh]

Importing CellDesginer file gives "Conversion Failed!" error. To reproduce: 1- Export any graph as CellDesigner 2- Import the saved file as CellDesigner

[hasanbalci]

One point about this issue: I get different error messages in public and internal Newt. It is "Conversion failed" in public and "Conversion service is not available" in internal.

[hasanbalci]

While trying to reproduce this issue, I also realized that second sample "CaM-CaMK dependent signaling to nucleus" cannot be exported as CD. It gives the same errors above.

[ugurdogrusoz]

@nasimsaleh Before we investigate this, let's:

• Make sure the two repos cd2sbgnml & cd2sbgnml-webservice under sbgn organization are up-to-date (compare with the same repo versions under royludo and ivis-at-bilkent, and if there are any fixes not copied to the repos under sbgn, we should do so)
• Make sure sbgn/cd2sbgnml builds properly to construct a jar file
• Copy the jar file constructed to the appropriate directory in sbgn/cd2sbgnml-webservice repo
• Build and deploy sbgn/cd2sbgnml-webservice in our public server
• Check if Newt can properly access this service and works as intended

[nasimsaleh]

@ugurdogrusoz now the service is up-to-date and it is using sbgn repo. Export worked with following samples (but not on the others):

• neuronal_muscle_signaling
• atm_mediated_phosphorylation_of_repair_proteins
• activated_stat1alpha_induction_of_the_irf1_gene
• vitamins_b6_activation_to_pyridoxal_phosphate
• glycolysis
• mammalian_cholesterol
• two_gene_system_behavior

Importing didn't work on any of the exported samples.

[ugurdogrusoz]

Obsolete