hyperspy

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Dark spot locator algorithm

7

#### Describe the functionality you would like to see. A function that automatically detects the positions and radii of dark spots in an image, and the ability to perform manual...

aidanc151

ROI selection

1

Hello everyone, I just started using hyperspy and I noticed that I cannot select customized ROI. I need to select triangles for ROI and I was wondering if there is...

ozgurculfa

Improve error message trying to load `zarr` dataset

7

When trying to load a `zspy` file with specifying the store, I get a `FileNotFoundError`. Even with following the example at https://hyperspy.org/rosettasciio/user_guide/supported_formats/zspy.html Making the `zspy`: ```python import numpy as np...

magnunor

Plotting model with second spectrum then removing it does not work

2

Something goes wrong with the navigator when adding and then removing a second navigator. Example: ```python import numpy as np import hyperspy.api as hs data = np.random.random((10, 20, 500)) s...

magnunor

Add `remove_spikes` method

4

This is a different method to remove spikes, significantly faster than the `spikes_removal_tools` and that work on `Signal2D` too. ### Progress of the PR - [x] Add `remove_spikes` method to...

ericpre

[pre-commit.ci] pre-commit autoupdate

1

updates: - [github.com/astral-sh/ruff-pre-commit: v0.6.8 → v0.7.0](https://github.com/astral-sh/ruff-pre-commit/compare/v0.6.8...v0.7.0)

pre-commit-ci[bot]

Remove baseline functionality using `pybaselines`

2

I am using it for Raman data, but I should be useful for other spectroscopy techniques, where the background can't be modelled by analytical functions, as `remove_background` does. I added...

ericpre

Release 2.2

2

As mentioned in https://github.com/hyperspy/hyperspy/issues/3448#issuecomment-2402413433 and https://github.com/hyperspy/hyperspy/pull/3449#issuecomment-2408968354, it would be good to make a release. I think we should do a minor release, because there are a number a features that...

ericpre

Signal extension YAML file path not compatible with src-layout in editable install

2

#### Describe the bug Hi all, The derived path to the signal extension file `hyperspy_extension.yaml` is not compatible with an extension package using a [src-layout](https://packaging.python.org/en/latest/discussions/src-layout-vs-flat-layout/) in an editable install (`pip...

hakonanes

Non Linear Multi Dimensional Axes

2

Problem: --------- There are increasingly a large number of custom scanning devices (including one from Direct Electron) which allow for custom scan patterns. This is useful for things like distributed...

CSSFrancis