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error in step1

Open AEAEAESSC opened this issue 1 year ago • 0 comments

Hello, this is my code. Please help me check where the problem is and how to solve it. Thank you very much." (python2.7_env) [zhanya@mu01 hess-hess-0.5]$ for chrom in $(seq 22)

do python hess.py
--local-hsqg /external/zhanya/hess/mdd3.txt --local-hsqg /external/zhanya/hess/whr4.txt
--chrom $chrom
--bfile /home/zhanya/hess-hess-0.5/1kg_eur_1pct/ 1kg_eur_1pct_chr$chrom
--partition /home/zhanya/hess-hess-0.5/partition.txt
--out /external/zhanya/hess/step1 done usage: hess.py [-h] [--bfile BFILE] [--chrom CHROM] [--partition PARTITION] [--local-hsqg LOCAL-HSQG] [--local-rhog LOCAL-RHOG LOCAL-RHOG] [--tot-hsqg TOT-HSQG TOT-HSQG] [--num-shared NUM-SHARED] [--pheno-cor PHENO-COR] [--local-hsqg-est LOCAL-HSQG-EST LOCAL-HSQG-EST] [--prefix PREFIX] [--max-num-eig MAX-NUM-EIG] [--min-eigval MIN-EIGVAL] [--min-maf MIN-MAF] [--reinflate-lambda-gc [REINFLATE-LAMBDA-GC [REINFLATE-LAMBDA-GC ...]]] [--gwse-thres GWSE-THRES] --out OUT hess.py: error: unrecognized arguments: 1kg_eur_1pct_chr1

AEAEAESSC avatar Dec 04 '23 02:12 AEAEAESSC