some questions about genome version

Open milkcookie opened this issue 2 years ago • 2 comments

hi all: is there any possible to change the config file to use hg19 genome for xHLA, can you tell me which files need to be changed?

Apr 10 '23 02:04 milkcookie

Could you let me know if you found any solution for the hg19? I have the same question because I have a large list of WES bams (hg19).

chr6 chr6_ssto_hap7 chr6_mcf_hap5 chr6_cox_hap2 chr6_mann_hap4 chr6_apd_hap1 chr6_qbl_hap6 chr6_dbb_hap3

With no HLA or ALT contigs

May 25 '23 11:05 NourMarzouka

Check this: https://github.com/humanlongevity/HLA/compare/master...isabl:xHLA:master

Jan 19 '24 11:01 serge2016