Can I run xHLA without docker?

[Tiredbird]

Hello all, I have no root access and I could not use docker. Could I use this software without docker ? How did I install it?

Thank you!

[zhoulin8908]

I want to know, too!!!

[polojacky]

Run.py under bin directory is the entry of the program. You can try running this file if you have installed all the dependencies such as diamond and some python and R packages. But I really don't recommend.

[koujiaodahan]

I want to know, too!!!

[koujiaodahan]

I suppose we can install all dependencies follwing the dockerfile

[t-carroll]

I also have this issue- would be great if there could be a conda option as an alternative, or some other prescribed way to install required dependencies.

[koujiaodahan]

I did it following the dockerfile. In fact ,I dont run with any AWS S3 inputs or outputs,so the boto3 package is not necessary and the corresponding code in run.py could be commented

[t-carroll]

I did it following the dockerfile. In fact ,I dont run with any AWS S3 inputs or outputs,so the boto3 package is not necessary and the corresponding code in run.py could be commented

thanks for that info, will give it a shot!

[chrissyhroberts]

My fork runs through R and Python. https://github.com/chrissyhroberts/xHLA_R