scATACpipe

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Cutadapt timeout

40

Hi, I've tried running scATACpipe and while this time it started without issues, the cutadapt has timed out. I've included my nextflow.log for your convenience as I'm not sure why...

priscilla-glenn

barcode whitelist

2

Hi, I am trying to analyze some newly generated scATAC data from Illumina and may have more than 20,000 cells which cellranger-atac count is unable to properly analyze. I would...

priscilla-glenn

Issue with symbolic links on 10XGENOMICS preprocessing workflow

2

Hi! I was trying to run the pipeline using a SMB-mounted directory in a network cluster, but I got an error at the beginning regarding symbolic links: "Command error: ln:...

AdrianParrilla