Hui Li

Hi @Julia-Ramirez , Yes the multi-allelic filter applies to both the effect and alternative allele. (@rkwalters please correct me if this/my understanding of the `ldsc` munging step is wrong!) Happy...

Hi @el1717 , If you're using the builtin/default reference panels in `mtag/ld_ref_panel/eur_w_ld_chr/` then unfortunately you have to cross-walk your input files somehow. These reference files use rsID so it's necessary...

Hi @cks2903 , I was one step behind Patrick - I just added the `--force` option which functions as @paturley described. Could you try repulling the repo and run MTAG...

Hi @123569 , Did you use the `--force` option? Can you attach the log file / Do you see the flag showing in the header? If so the flag should...

Hi @123569 , I echo everything @paturley said. If you decide to estimate the sigma matrix via LDSC first, the flag to input it to MTAG is `--residcov_path`, and you...

@123569 The format of the Sigma should be a whitespace-delimited .txt file containing just the numbers - so no brackets or the header. @paturley that's a good point - munging...

Hi @laurenhsu1 , Thanks for your suggestions. To circumvent these compatibility problems, we recommend you install the Anaconda python distribution and create an environment using the `environment.yml` file we provide...

Hi @123569 , Please find the following quote from the wiki page [here](https://github.com/omeed-maghzian/mtag/wiki/Tutorial-1:-The-Basics#sample-gwas-results-and-data-format): > We demonstrate the use of mtag with GWAS results on neuroticism and subjective well-being from Okbay...

Hi @carbocation , Do you still have the N column present in the input sumstats even though you're using `--n_value`? I will tweak the codes so that it prioritizes the...

Could you quickly check and send the first few lines of each sumstats you're using (just via `head` in bash)? Thanks, Hui