compleasm
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huangnengCSU
A genome completeness evaluation tool based on miniprot
$ python compleasm.py -h /usr/local/compleasm/compleasm.py:415: SyntaxWarning: invalid escape sequence '\[' "[^0-9][0-9]*:[0-9]*[^0-9]{0,1}[0-9]*[^0-9]{0,2}[0-9]*\[%s\]" usage: compleasm.py [-h] {download,list,protein,miniprot,analyze,run} ... $ cat _version.py __version__ = "0.2.4"% Mac mini M1 2020 (arm64) Python 3.12.1 |...
Dear all, I must say, I am quite intrigued comparing it to BUSCO However, I came across an error while trying to run it and i have no idea where...
About a year ago the BUSCO dataset depository started, for whatever reason, being unaccessible from Ukrainian, Russian, Belarusian and Moldovan IP addresses. To deal with this problem, the authors of...
Hi @huangnengCSU ! This tool is amazing, I was using it for a few genomes in the lab but I noticed that the "summary.txt" is overwritten if you run twice...
Hi: My genome size is approximately **50G**, and the database used is **embryophyta_odb10**. The evaluation results for Compleasm are as follows:  The evaluation results for BUSCO are as follows(--miniprot):...
The current implementation uses HMMER but PyHMMER is much much faster when multi-threaded. Is there any plan to provide support for PyHMMER? https://academic.oup.com/bioinformatics/article/39/5/btad214/7131068 
This patch should fix the following warnings I was getting; output is the same: ``` compleasm.py:1544: FutureWarning: When grouping with a length-1 list-like, you will need to pass a length-1...
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A genome completeness evaluation tool based on miniprot