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Something wrong with metazoa_odb12 lineage fetch

Open DeadlineWasYesterday opened this issue 8 months ago • 1 comments

The compleasm script kept failing to download the file when I tried to run it and was erroring out. I downloaded it manually from the BUSCO ftp, extracted the tar, compressed the refseq_db.faa file and created the metazoa_odb12.done file to make it work. I also noticed that the new odb12 lineages don't show up with compleasm list --remote

This is the command I ran: compleasm.py run -t 16 -a GCF_947086385.1/G*.fna.gz -L mb_odb12 -l metazoa -o GCF_947086385.1/GCF_947086385.1.mb

DeadlineWasYesterday avatar Aug 07 '25 00:08 DeadlineWasYesterday

Hi @DeadlineWasYesterday

Apologies for the late reply. I just figured out the issue.

Although I had already fixed the download problem earlier, I forgot to update the Bioconda recipe. As a result, the Bioconda version of compleasm v0.2.7 still contains the bug.

You can clone the repository directly and have a try because the source code is the corrected version.

I will update bioconda recipe now but it still takes few days to work.

Neng

huangnengCSU avatar Sep 08 '25 14:09 huangnengCSU