PyShEx icon indicating copy to clipboard operation
PyShEx copied to clipboard

Biolinkml Performance Issue

Open hsolbrig opened this issue 5 years ago • 0 comments

The biolinkml biolink-model evaluator takes a loooong time to complete, even in a simple test. This is due to the pattern:

<C> CLOSED {
    (  $<C_tes> (  &<B_tes> ;
          rdf:type [ <t1> ] ?
       ) ;
       rdf:type [ <t2> ]
    )
}

which, in certain situations, can cause the evaulator to take off on a combinatorial explosion

hsolbrig avatar Jul 10 '19 23:07 hsolbrig