Harshad
Harshad
[Error:](https://build.berkeleybop.io/job/knowledge-graph-hub/job/kg-microbe/job/master/260/console) ```bash 10:16:18 File "/var/lib/jenkins/workspace/edge-graph-hub_kg-microbe_master/gitrepo/venv/lib/python3.9/site-packages/kg_microbe/utils/pandas_utils.py", line 104, in establish_transitive_relationship 10:16:18 zip(subject_intermediate_df["object"], subject_intermediate_df["subject"], strict=False) 10:16:18 TypeError: zip() takes no keyword arguments ``` Cause: Jenkins may be using an older version of...
Fixes #180 ---- from @turbomam see also - https://microbiology.figshare.com/ - https://figshare.com/articles/dataset/International_Journal_of_Systematic_and_Evolutionary_Microbiology_IJSEM_phenotypic_database/4272392
This is w.r.t a conversation with @sierra-moxon . The project (or rather PR) that triggered this issue: https://github.com/Knowledge-Graph-Hub/kg-microbe-merge/pull/1 The issue that concerns KGX is that instead of having a physical...
This partially addresses #132 I have made minor tweaks to the code where I capture `division` properties from NCBITaxon's `division.dmp` file and add the property to all relevant classes. `Homo...
Hello! When I see the [`Homo Sapiens` class in Bioportal](https://bioportal.bioontology.org/ontologies/NCBITAXON/?p=classes&lang=en&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FNCBITAXON%2F9606&jump_to_nav=true), I see properties that may not be present in the release files here. I'm just curious if there were no...
This is based off a Slack conversation in the `#linkml-developers` channel linkml's `json_dumper` dumps the type of object (`@type`) but `yaml_dumper` does not. e.g. `json_dumper.dumps(obj)` ``` '{\n "id": "CHANGE:001",\n "old_value":...