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Published 20 hours ago • verified publisher icon hpcaitech

submit unsuccessfully

Open MrGao1997 opened this issue 1 year ago • 4 comments

when I submit the task an error occurred, how can I fix it?

Traceback (most recent call last): File "/Share/app/FastFold/inference.py", line 36, in from fastfold.model.fastnn import set_chunk_size File "/Share/app/FastFold/fastfold/model/fastnn/init.py", line 1, in from .msa import MSACore, ExtraMSACore, ExtraMSABlock, ExtraMSAStack File "/Share/app/FastFold/fastfold/model/fastnn/msa.py", line 23, in from fastfold.model.fastnn.kernel import LayerNorm, bias_dropout_add File "/Share/app/FastFold/fastfold/model/fastnn/kernel/init.py", line 2, in from .layer_norm import FusedLayerNorm as LayerNorm File "/Share/app/FastFold/fastfold/model/fastnn/kernel/layer_norm.py", line 2, in from .cuda_native.layer_norm import FusedLayerNormAffineFunction File "/Share/app/FastFold/fastfold/model/fastnn/kernel/cuda_native/layer_norm.py", line 5, in fastfold_layer_norm_cuda = importlib.import_module("fastfold_layer_norm_cuda") File "/Share/app/miniconda3.9-pytorch/envs/fastfold/lib/python3.8/importlib/init.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) ModuleNotFoundError: No module named 'fastfold_layer_norm_cuda'

MrGao1997 avatar Apr 02 '23 08:04 MrGao1997

Hi, have you installed FastFold before using?

Gy-Lu avatar Apr 03 '23 06:04 Gy-Lu

I have installed it but maybe some package was not suitable, so it was always failure when I sbatch job.

However, what confused me is I do not kown where the wrong is. And can you help me?

Thanks a lot.

---- Replied Message ---- | From | @.> | | Date | 04/03/2023 14:22 | | To | @.> | | Cc | @.>@.> | | Subject | Re: [hpcaitech/FastFold] submit unsuccessfully (Issue #172) |

Hi, have you installed FastFold before using?

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MrGao1997 avatar Apr 03 '23 08:04 MrGao1997

Hi, sorry for being late. I am not sure about the environment you run the code and the one you install FastFold is the same one. The error message indicates there is no CUDA kernel module that should be compiled when installing FastFold.

Gy-Lu avatar Apr 14 '23 08:04 Gy-Lu

@MrGao1997 I encountered the same issue, have you solved it now? Can you tell me?

awer-A avatar Mar 25 '24 13:03 awer-A