Zeng Lingyu

execute in docker images： I use this images: nvidia/cuda:latest. root@fa5ddca634eb:/# ./unidock --receptor ./input_file_example/2bm2_protein.pdbqt --gpu_batch ./input_file_example/2bm2_ ligand.pdbqt --search_mode balance --scoring vina --center_x 40.415 --center_y 110.986 --center_z 82.673 --size_x 25 --size_y 25...

I encountered an issue while using Uni-Dock for molecular docking. When I ran the command ./unidock --receptor ./input_file_example/2bm2_protein.pdbqt --gpu_batch ./input_file_example/2bm2_ligand.pdbqt --search_mode balance --scoring vina --center_x 40.415 --center_y 110.986 --center_z 82.673...

I need at least 24GB of GPU memory for Uni-Dock to launch？

I use binary file，before. Maybe is the compiled problem.

When compiled it, I have some trouble. if unidock runing in anaconda, will be great.

使用ollama qwen2.5-14b翻译

Processed /tmp/libgen.scimag02425000-02425999_unzip/10.1016/0040-4020%2873%2980125-5.pdf on GPU 3 STDERR: 2024-07-31 10:48:27.187 | WARNING | magic_pdf.cli.magicpdf:get_model_json:310 - not found json /tmp/libgen.scimag02425000-02425999_unzip/10.1016/0040-4020%2873%2980125-5.json existed 2024-07-31 10:48:27.206 | INFO | magic_pdf.cli.magicpdf:do_parse:91 - local output dir is /results/paper/magic-pdf/0040-4020%2873%2980125-5/auto...

python==3.10遇到的问题： Processed /tmp/libgen.scimag02425000-02425999_unzip/10.1016/0040-4020%2875%2980092-5.pdf on GPU 2 STDERR: 2024-07-31 11:01:30.201 | WARNING | magic_pdf.cli.magicpdf:get_model_json:310 - not found json /tmp/libgen.scimag02425000-02425999_unzip/10.1016/0040-4020%2875%2980092-5.json existed 2024-07-31 11:01:30.645 | INFO | magic_pdf.cli.magicpdf:do_parse:91 - local output dir is...

 此处配置的为fastgpt-dify-adapter 的认证密钥（API_KEY）  此处是fastgpt-dify-adapter 服务访问fastgpt的密钥(FASTGPT_API_KEY)

本地访问会超时，主要是权重加载和思考模型导致在分块理解时候超时，后续需要考虑适当延长超时时间，通过环境变量控制