Manuel Holtgrewe
Manuel Holtgrewe
**Is your feature request related to a problem? Please describe.** SVs are a bit hard to interpret on their own and the "match in other databases" counts are also only...
**Is your feature request related to a problem? Please describe.** The `alfred qc` tool allows for the easy evaluation of quality control data for BAM files. We cannot import such...
**Describe the bug** In the case of missing data `-1` is displayed. **To Reproduce** N/A **Expected behavior** A clear and concise description of what you expected to happen. **Screenshots** `N/A`...
**Describe the bug** Currently, the X-recessive filter sets `index=any`, `mother=any`, `father=1/1`. This was reported by a Berlin clinician as: > In strict sense of "X-recessive", Index should be 1/1, and...
**Is your feature request related to a problem? Please describe.** PR #1200 nicely decreased Docker image build times by copying from upstream image. However, python tests take relatively long time....
**Is your feature request related to a problem? Please describe.** In various places, it is important to know the UUIDs of all cases that a user has access to. This...
**Is your feature request related to a problem? Please describe.** We annotate the files with SHA256 checksums in the phenopackets manifest. However, we do not check them. **Describe the solution...
**Is your feature request related to a problem? Please describe.** #1141 added support for coverage from ngs-bits using MappingQC. Support for other output is missing. **Describe the solution you'd like**...
**Describe the bug** In a number of places, we currently have duplicate plugin names, e.g., `cases_import.plugins.{ProjectAppPlugin,BackgroundJobsPlugin}`. This causes confusion when plugins are accessed by name. **To Reproduce** N/A **Expected behavior**...
**Is your feature request related to a problem? Please describe.** We expect the files in `varfish/static/js` to not be used any more. **Describe the solution you'd like** Remove them. **Describe...