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Published 20 hours ago • verified publisher icon hoelzer

GARD_detect HPC issues, closes #31

Open fischer-hub opened this issue 3 years ago • 2 comments

  • changed /TEMPDIR from $(PWD) to /tmp because path was too long for MPI
  • copy ${aln} to /TEMPDIR since GARD wasn't able to follow the symlink on the cluster apparently
  • adjust paths to new /TEMPDIR

fischer-hub avatar Jan 17 '22 11:01 fischer-hub

Is the literal path /tmp used or is a /tmp in a virtual machine used? Our file system does not have /tmp on processing nodes.

mchaisso avatar Jan 17 '22 16:01 mchaisso

Is the literal path /tmp used or is a /tmp in a virtual machine used? Our file system does not have /tmp on processing nodes.

Hi @mchaisso , it should be the literal path. Did this solution not run on your cluster? Do the nodes on your cluster have a seperate filesystem from the rest?

fischer-hub avatar Jan 17 '22 18:01 fischer-hub