Hector Medina
Hector Medina
The table, grammar, and examples documenting counters need to be updated to Kappa4 syntax in the user's manual. For example, the grammar table still lists colons rather than equal signs...
If I have 20 snapshots in the UI, I have to hit export 20 times. It would be nice if there were an `export all` button right of the current...
The GUI (via KaSa I presume) can detect dead rules. However this does not extend to rules that rely on a connecting third party (or parties). Take for example: ```...
When exporting a snapshot in SVG, the resulting file does not contain the legend of what color is what agent. Given #488 this makes exported SVG snapshots difficult to relate...
The user manual, table 5.1, contains no mention of this user-defined parameter. E.g. are the quote marks mandatory `4` vs `"4"`? Can one use lowercase `v3` rather than uppercase `V3`?...
One way of dealing with large models is to down-scale them (e.g. by adjusting initial amounts, and rates) into smaller simulations that run faster. However, the noise is amplified as...
The Javascript simulator allows one to pause the simulation at arbitrary times through the interactive mode. It would be useful if one could demand snapshots, and add perturbations or observables...
In Kappa syntax, bonds are denoted with "!n", with "n" an integer identifier. These are always paired, with a single pair before/after the operator "->". If the bond is added,...
Currently, when one writes an ill-formated statement, an error is shown saying "syntax error". It would be useful if the message were accompanied by what the expected syntax was. For...