Hassan Massalha

Hi all, I just started to use nextflow and I would like to pass variables from the terminal to my notebook. I used the following command: ``` papermill input.ipynb output.ipynb...

Hi and thanks for this great package. I getting an error while opening a symbolic link notebook to the working directory. Do you have any recommendations how to over come...

not-yet-implemented 'Matrix' subsetting

2

Hi, I am running the pipeline as in the website @pimentel [https://bustools.github.io/BUS_notebooks_R/velocity.html](url) using my data. I am getting the following error: ``` seu % SCTransform(assay = "uf", new.assay.name = "spliced")...

Hi, In the velocity pipeline you have the following: ``` cd ./output/neuron10k_velocity bustools correct -w ../../data/whitelist_v3.txt -p output.bus | \ bustools sort -o output.correct.sort.bus -t4 - bustools capture -s -x...

bustools capture (0.39.3) tutorial error

32

Hi, I am running over the tutorial of 'RNA velocity with kallisto | bus and velocyto.R'.... and I have two lines that I can't run: `bustools capture -o cDNA_capture/ -c...

installation error on Rstudio sever

3

Hi, I am using the Rstudio in a linux server. I am getting the following error when I try to install the velocyto.R: `/usr/bin/ld: cannot find -lboost_filesystem /usr/bin/ld: cannot find...

add Labels legend or customised legend

4

Thanks for the amazing tool! I have a list of gene labels. I added red color for genes sharing a pathway, and left black the genes that are not part...