Hassan Massalha

hi, I found that all line with `%` making errors. I am using `%load_ext rpy2.ipython` I am getting error!

Thanks a lot. Soon I will check the suggested command. I tried your second suggestion, but was not successful as I am not getting the relevant files in the folders...

Thanks a lot, The `bustools capture` worked for me and I see the newly generated files. The `bustools count` is also worked for me but the output is not written...

Ok, thanks just fix it. Thought you can correct the command `mkdir spliced/ unspliced/` in the notebook if there is no need for the two directories. I am adding here...

Thanks a lot for your time and your help. I am working with human samples, for now, I ran the pipeline with one sample. I have one fastq file with...

I did what you are suggesting in a separate analysis. But I still didn't get to the end of the tutorial to generate the velocity maps. Know I see that...

The Seurat object that I have built after running zUMIs with STAR. I think I am missing the spanning exon-intron reads (this is what zUMIs people told me!) I tried...

Hi, I have a problem running the velocyto.R on Rstudio server version 3.5.1 I am getting the following message: `/usr/bin/ld: cannot find -lboost_filesystem /usr/bin/ld: cannot find -lboost_system collect2: error: ld...

Hi, Thanks for your help. I am getting frustrated with installing this! I am not a computer scientist. I am sure I have a problem with the linkers and the...

Hi, Here is the log for the installation of velocyto.R: > devtools::install_github("velocyto-team/velocyto.R") > Downloading GitHub repo velocyto-team/velocyto.R@master > Your system is ready to build packages! > Skipping 1 packages not...