Heather

This seems to happen because the `-c` option removes any call across all samples where _any_ of your samples has a non-ACTG at that position. This could be due to...

I am having the same problem. [I think the issue may be here.](https://github.com/broadinstitute/cromwell/blob/b4ec53e0f038c3e27a7a3a8b483066c962cc164d/supportedBackends/google/pipelines/v2alpha1/src/main/scala/cromwell/backend/google/pipelines/v2alpha1/PipelinesApiAsyncBackendJobExecutionActor.scala#L135) This seems to be where we check which outputs are type File or Directory, I think it's...

:+1: to the usefulness of this feature!

> If all values were accessible either through the WDL semantics (~{foo}) AND their shell semantics ('${foo}`) it would probably be the most flexibly and lowest impact to the user....

Agreed that enums would be very useful for input validation. It seems much cleaner and simpler to maintain than writing a validation task that parses the user's inputs.

@mscwilson I know this is a very old issue at this point, but I've figured out how to bind these to keyboard shortcuts! Open Preferences > Key Bindings Add this...