Mark Hiner

Results 78 issues of Mark Hiner

From [this](https://imagesc.zulipchat.com/#narrow/stream/328100-scyjava.2Bpyimagej/topic/Can't.20run.20a.20local.20Fiji.20with.20pyimagej/near/397127672) failure on windows: ``` Checking Maven: --> Maven executable = C:\Users\chiarutt\AppData\Local\abba-python\Library\bin\mvn.CMD $ mvn -v Command '['C:\\Users\\chiarutt\\AppData\\Local\\abba-python\\Library\\bin\\mvn.CMD', '-v']' returned non-zero exit status 1. ... Great job! All looks good....

bug

It looks like the launcher is not configuring the `java.library.path` in a way that's compatible with the Zulu JDK. See [this forum thread](https://forum.image.sc/t/loadlibrary-unsatisfiedlinkerror-with-zulu-openjdk/67997/6).

bug

The URL location for `ScriptInfos` omits the `scripts` directory they were discovered from, resulting in paths that are incorrect.. e.g.: ![image](https://github.com/scijava/scijava-common/assets/1123809/49babd51-9288-4375-93e8-c3b5ef7a6f31) This plugin actually lives in `Fiji.app/plugins/scripts/File/Open_Samples` ![image](https://github.com/scijava/scijava-common/assets/1123809/e0531f33-57a0-4ea7-9f00-b317843db9da) Plugins that...

bug

Eclipse: Version: 2023-06 (4.28.0), Build id: 20230608-1333 Fiji: at https://github.com/fiji/fiji/commit/880eb2529bae00e4251a2f0248a26d7368ec228d OS: Windows When Fiji is imported as a maven project into Eclipse, sometimes when doing an "Update Maven project" action...

unscheduled

I am running into various issues running Ops from the Fiji search. I'm not sure if some are related or not. ### Computer ops don't work 1. Open an image...

Presumably one of these has an invisible character to separate them. However, it is extremely confusing. I propose either renaming the second entry to something like "Utils" or "Tools", or...

With the current .dmg installer, the nicely-formatted window for dragging Fiji.app to Applications is not generated properly: - Applications folder is missing - Window is unusually large, leading to a...

We want to expose colocalisation functionality in [ImageJ Ops](https://github.com/imagej/imagej-ops). This way individual algorithms can be reused in other contexts (e.g. KNIME), and traditional ImageJ/Fiji functionality will benefit from Ops extensibility.

Algorithms

[JACoP](http://imagejdocu.tudor.lu/doku.php?id=plugin:analysis:jacop_2.0:just_another_colocalization_plugin:start) may have useful functionality that we should be using here. Someone should investigate!

enhancement
Algorithms
Input GUI v2

![image-plus-not-supported](https://user-images.githubusercontent.com/1123809/170526245-18e401d6-173e-43f4-94f9-a398ede5e4d5.png) The `Manual Threshold...` `.js` script creeps into the search results and its `ImagePlus` parameter doesn't map appropriately. This will have to be handled appropriately in conjunction with https://github.com/imagej/imagej-legacy/issues/264