Mark Hiner

Results 78 issues of Mark Hiner

If we `{% include clear %} on the same line as other text it appears to break the html: ![image](https://user-images.githubusercontent.com/1123809/119159171-9b29f180-ba1c-11eb-9ee2-6f78a54e8c82.png) When used as intended, it creates a *huge* amount of...

bug

When we wrap numpy arrays to `ImagePlus` instances we end up with a *virtual* `ImagePlus` that does not automatically reflect changes to its pixel values. We have the [`synchronize_ij1_to_ij2`](https://github.com/imagej/pyimagej/blob/57f4b3ec49021386d2db6fa848b35831624b7d02/imagej/__init__.py#L909-L929) helper...

Currently if you give `imagej.init(...)` a directory it assumes it's a Fiji/ImageJ installation and always looks in `jars` and `plugins` subdirctories. For completeness it may be useful to provide an...

enhancement

[@ctrueden Edit] If we create a script wrapper for each original ImageJ command, they will be easier to use in SciJava-friendly contexts, such as napari-imagej's search bar, because the types...

enhancement

Right now the Gauntlet tests the launcher in a fresh state. This gave false confidence in the success of a release, not accounting for the ways existing installations could be...

There was a [report](https://forum.image.sc/t/updated-imagej-launcher-java-bundles/44841/3) that updating to the latest (6.0.1) launcher on Windows 10 resulted in a new request for firewall access from `javaw.exe`, whereas in the past the access...

Our goal is to simplify the ImageJ launch process so we are not so intimately tied to a custom, complex launcher with its own JDK version concerns. Perfect world goals...

deployment
java8

We received a report in the testing of ImageJ-MATLAB that launching from within MATLAB can replace the MATLAB icon with a Fiji icon. I am hazy on the details but...

If I run `ImageJ-win64.exe --update update` to update Fiji from the command line, it just does nothing with no output right now. If I run `ImageJ-win64.exe --debug --update update`, it...

bug

When running `--update update` I'm asked how to proceed with any jars that need to be updated. The options are in the form of `1, 2` etc... But if I...

bug